Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1935 XP_006713520 17 4312 NP_001769 16 5631 NP_001242959 16 5631 XP_005245682 16 5631 NP_001073861 15 9605 NP_612354 15 9605 XP_005257123 15 9605 XP_006713882 15 9605 XP_006713881 15 9605>NP_004295 Length = 1620 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAIEILLMP 9 AA EILLMP Sbjct: 371 AAREILLMP 379>XP_006713520 Length = 285 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 AAIEILLMP 9 AA E+L++P Sbjct: 122 AAFEVLILP 130>NP_001769 Length = 243 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AIEILLMP 9 A+E+LL+P Sbjct: 11 ALELLLLP 18>NP_001242959 Length = 252 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AIEILLMP 9 A+E+LL+P Sbjct: 11 ALELLLLP 18>XP_005245682 Length = 154 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AIEILLMP 9 A+E+LL+P Sbjct: 11 ALELLLLP 18>NP_001073861 Length = 455 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 AAIEILLMP 9 AA E+LL P Sbjct: 56 AAPEVLLQP 64>NP_612354 Length = 1242 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIEILLMP 9 A+EILL P Sbjct: 265 ALEILLHP 272>XP_005257123 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AAIEILLMP 9 AA+ +LL P Sbjct: 124 AAVSVLLAP 132>XP_006713882 Length = 1242 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIEILLMP 9 A+EILL P Sbjct: 265 ALEILLHP 272>XP_006713881 Length = 1024 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AIEILLMP 9 A+EILL P Sbjct: 46 ALEILLHP 53Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.146 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 381,822 Number of extensions: 604 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |