Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_006545 16 5631 NP_001172026 15 9605 NP_000198 15 9605 NP_001172027 15 9605 NP_001035835 15 9605 NP_149037 15 9605 NP_001171700 15 9605>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAAFVSQIQ 9 AAA VSQIQ Sbjct: 2552 AAALVSQIQ 2560>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAAFVSQIQ 9 AAA VSQIQ Sbjct: 2544 AAALVSQIQ 2552>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAAFVSQIQ 9 AAA VSQIQ Sbjct: 2505 AAALVSQIQ 2513>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAAFVSQIQ 9 AAA VSQIQ Sbjct: 2584 AAALVSQIQ 2592>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAAFVSQIQ 9 AAA VSQIQ Sbjct: 2597 AAALVSQIQ 2605>NP_006545 Length = 263 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 AAAFVSQI 8 A AFVSQI Sbjct: 5 AEAFVSQI 12>NP_001172026 Length = 110 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAAFVSQ 7 AAAFV+Q Sbjct: 22 AAAFVNQ 28>NP_000198 Length = 110 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAAFVSQ 7 AAAFV+Q Sbjct: 22 AAAFVNQ 28>NP_001172027 Length = 110 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAAFVSQ 7 AAAFV+Q Sbjct: 22 AAAFVNQ 28>NP_001035835 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 AAAFVSQ 7 AAAFV+Q Sbjct: 22 AAAFVNQ 28>NP_149037 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FVSQIQ 9 FVSQIQ Sbjct: 238 FVSQIQ 243>NP_001171700 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FVSQIQ 9 FVSQIQ Sbjct: 238 FVSQIQ 243Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.122 0.288 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 268,749 Number of extensions: 207 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |