Immunomodulatory Regions(oligonucleotides) within a DNA sequence
This tool uses SVM models to predict whether specific regions within an oligonucleotide taken alone would be useful as immunomodulatory DNA adjuvants or not when the user submits sequences in the FASTA format. It picks up scanning window fragments of the user defined length for this purpose. It also displays a few additional properties of the query oligonucleotides namely the molecular weight (for phosphodiester backbone), GC content, length and melting temperature of the double stranded molecule of the sequence. For more information see HELP page.

Type or paste your DNA sequences    


Select type of model for prediction :
Composition CpG Balanced
Composition+Motif CpG Balanced
Palindrome CpG Balanced
Palindrome+Motif CpG Balanced

Window length: 

Choose SVM threshold: