Details of SAPdb entry with Sequence FFF |
Primary information | |
---|---|
SAPdb ID | 1179, |
PMID | 19527662 |
Peptide Name | TriPhenylalanine |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Transmission Electron Microscopy (TEM), Scanning Electron Microscopy (SEM) and FTIR (Fourier Transform Infrared) |
Solvent | Chlorinated alcohol |
Method | Peptide stock solution prepared in HFP (1,1,1,3,3,3-hexafluoro-2-propanol) at conc 100mg/ml. Peptide stock solution diluted with water to 2mg/ml. |
Conc | 2mg/ml |
Temperature | Room temperature |
Year | 2009 |
Self assembly | Yes |
Type of Self assembly | Plate like Nano-structure |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
Stable | |
Other | |
NA | |
None | |
N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1183, |
PMID | 24468750 |
Peptide Name | TriPhenylalanine |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Insilico method: MARTINI coarse - grained molecular dynamic |
Solvent | Water |
Method | Simulation of a system consisting of 600 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 120 mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. Ten 900 ns MD runs have been performed using different initial velocities starting from a state in which the peptides were placed randomly in the water box. |
Conc | 120 mg/ml |
Temperature | 37 °C |
Incubation Time | 600- 900 ns (nanoseconds) |
Year | 2014 |
Self assembly | Yes |
Type of Self assembly | Nanospheres (in seven out of ten trajectories), Nanorods ( in the 3 out of 10 trajectories) |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Nanosphere, Nanorod | |
NA | |
None | |
N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1184, |
PMID | 24468750 |
Peptide Name | TriPhenylalanine |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Insilico method: MARTINI coarse - grained molecular dynamic |
Solvent | Water |
Method | To examine the effect of concentration on the formation of FFF nanostructures, they performed two independent 4000 ns long MD simulations at a lower peptide concentration of 45 mg /ml. Simulation of a system consisting of 600 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 45mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. T |
Conc | 45 mg/ml |
Temperature | 37 °C |
Incubation Time | 1500 ns |
Year | 2014 |
Self assembly | Yes |
Type of Self assembly | Nanorod |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
Stable for 2 microseconds | |
Nanorod | |
NA | |
None | |
N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1185, |
PMID | 24468750 |
Peptide Name | TriPhenylalanine |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Insilico method: MARTINI coarse - grained molecular dynamic |
Solvent | Water |
Method | To examine the effect of concentration on the formation of FFF nanostructures, they performed two independent 4000 ns long MD simulations at a lower peptide concentration of 45 mg /ml. Simulation of a system consisting of 600 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 45mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. T |
Conc | 45 mg/ml |
Temperature | 37 °C |
Incubation Time | 3500 ns |
Year | 2014 |
Self assembly | Yes |
Type of Self assembly | Nanosphere |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Nanosphere | |
NA | |
None | |
N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1186, |
PMID | 24468750 |
Peptide Name | TriPhenylalanine |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Insilico method: MARTINI coarse - grained molecular dynamic |
Solvent | Water |
Method | Simulation of a system consisting of 1800 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 80 mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. Ten 900 ns MD runs have been performed using different initial velocities starting from a state in which the peptides were placed randomly in the water box. |
Conc | 80 mg/ml |
Temperature | 37 °C |
Incubation Time | 6000 ns |
Year | 2014 |
Self assembly | Yes |
Type of Self assembly | Nanorods and Nanosphere |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Nanosphere, Nanorod | |
NA | |
None | |
N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1763, |
PMID | 30968092 |
Peptide Name | L-Phe-L-Phe-L-Phe |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | tripeptide |
Conjugate partner | None |
Technique | SEM, TG, VCD, and solid-state NMR |
Solvent | HFIP |
Conc | 10 μL |
Temperature | 4.9-5.2 |
Temperature | 230℃ |
Year | 2019 |
Self assembly | Yes |
Type of Self assembly | nanostructures |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanostructure | |
NA | |
None | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1764, |
PMID | 30968092 |
Peptide Name | D-Phe-L-Phe-L-Phe |
Peptide sequence | fFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | tripeptide |
Conjugate partner | None |
Technique | SEM, TG, VCD, and solid-state NMR |
Solvent | HFIP |
Conc | 10 μL |
Temperature | 4.9-5.2 |
Temperature | 229℃ |
Year | 2019 |
Self assembly | Yes |
Type of Self assembly | nanostructures |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanostructure | |
NA | |
None | |
N[C@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1765, |
PMID | 30968092 |
Peptide Name | L-Phe-D-Phe-L-Phe |
Peptide sequence | FfF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | tripeptide |
Conjugate partner | None |
Technique | SEM, TG, VCD, and solid-state NMR |
Solvent | HFIP |
Conc | 10 μL |
Temperature | 4.9-5.2 |
Temperature | 238℃ |
Year | 2019 |
Self assembly | Yes |
Type of Self assembly | nanostructures |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanostructure | |
NA | |
None | |
N[C@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1766, |
PMID | 30968092 |
Peptide Name | LPhe-L-Phe-D-Phe |
Peptide sequence | FFf |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | tripeptide |
Conjugate partner | None |
Technique | SEM, TG, VCD, and solid-state NMR |
Solvent | HFIP |
Conc | 10 μL |
Temperature | 4.9-5.2 |
Temperature | 251℃ |
Year | 2019 |
Self assembly | Yes |
Type of Self assembly | nanostructures |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanostructure | |
NA | |
None | |
N[C@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1849, |
PMID | 27548765 |
Peptide Name | triPhenylalanine(FFF) |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Scanning Electron Microscopy (SEM) |
Solvent | 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) |
Conc | 100 mg/mL |
Year | 2016 |
Self assembly | NA |
Type of Self assembly | hollow nanotubes and spherical nanovesicles, and solid nanorods and nanospheres |
Tertiary Structure (Technique) | Not Predicted), |
Linear and Cyclic both | |
NA | |
NA | |
Nanotube, Nanosphere | |
NA | |
FFF | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1851, |
PMID | 27548765 |
Peptide Name | FFF |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Scanning Electron Microscopy (SEM) |
Solvent | 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) |
Conc | 100 mg/mL |
Year | 2016 |
Self assembly | NA |
Type of Self assembly | nanotoroid |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Other | |
NA | |
FFF | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1961, |
PMID | 28703237 |
Peptide Name | Fmoc-FFF |
Peptide sequence | FFF |
N-Terminal Modification | Fmoc [or N-(fluorenyl-9-methoxycarbonyl)] |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | FTIR |
Year | 2017 |
Self assembly | Yes |
Type of Self assembly | Nanofibres |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Nanofiber | |
NA | |
None | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1974, |
PMID | 28767108 |
Peptide Name | ferrocene-Phenylalanine-Phenylalanine-Phenylalanine (Fc-FFF) |
Peptide sequence | FFF |
N-Terminal Modification | Ferrocene (FC) |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | confocal laser scanning microscopy (CLSM), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and atomic force microscope (AFM) |
Solvent | phosphate buffer |
Conc | 50 mM |
Temperature | 7.2 |
Temperature | 60 °C |
Incubation Time | 30 s |
Year | 2017 |
Self assembly | Yes |
Type of Self assembly | Nanovesicles |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanovesicle | |
632 | |
None | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 2013, |
PMID | 28955776 |
Peptide Name | H-Phe- Phe-Phe-OH (FFF) |
Peptide sequence | FFF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | ultraviolet (UV) absorption spectroscopy, fluorescence spectroscopy and circular dichroism (CD) spectroscopy |
Solvent | Tris-NaCl EDTA (TNE) buffer |
Temperature | 7.4 |
Year | 2017 |
Self assembly | Yes |
Type of Self assembly | nanostructured aggregates |
Tertiary Structure (Technique) | Not Predicted), |
NA | |
NA | |
NA | |
Nanostructure | |
NA | |
None | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 2017, |
PMID | 28955776 |
Peptide Name | Boc-FFF |
Peptide sequence | FFF |
N-Terminal Modification | Boc (or t-butoxycarbonyl) |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 3 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | ultra- violet (UV) absorption spectroscopy, fluorescence spectroscopy, cir- cular dichroism (CD) study, viscosity measurement and thermal dena- turation analysis of DNA |
Solvent | Tris-NaCl EDTA (TNE) buffer |
Temperature | 7.4 |
Year | 2017 |
Self assembly | Yes |
Type of Self assembly | bionanospheres |
Tertiary Structure (Technique) | Not Predicted), |
Cyclic | |
NA | |
NA | |
Nanosphere | |
NA | |
None | |
N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |