SAPdb: Entry Card with Detailed Information of Peptide

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Details of SAPdb ID 1185
Primary information
SAPdb_ID1185
PMID24468750
Year2014
NameTriPhenylalanine
SequenceFFF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-terminal ModicationNone
Length3
Peptide/Conjugate/MixturePeptide
Conjugate PartnerNone
TechniqueInsilico method: MARTINI coarse - grained molecular dynamic
SolventWater
MethodTo examine the effect of concentration on the formation of FFF nanostructures, they performed two independent 4000 ns long MD simulations at a lower peptide concentration of 45 mg /ml. Simulation of a system consisting of 600 FFF peptides and 24 442 water beads in a cubic box of 15.5 nm (corresponding to a peptide concentration of 45mg/ml with the CG molecular dynamics simulations, using the MARTINI V2.1 force field. T
Concentration45 mg/ml
pHNA
Temperature
37 °C
Incubation Period3500 ns
Self-Assembly FormationYes
Type of Self-AssemblyNanosphere
Size of Self-Assembled structureNA
Linear/CyclicLinear
Stability of NanostructureNA
CommentNA
Secondary information
Physico-Chemical properties
Physico-Chemical properties
STRUCTURE
Predicted Structure
SMILESN[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O