EbolaVCR: Computational resources for designing drugs and vaccines against EBOLA virus

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Ebola Virus Computational Resources (EbolaVCR) is the in silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. This server enlists possible vaccine candidates, therapeutic siRNAs and other related resources.

Reference: Dhanda et. al. (2016) A web-based resource for designing therapeutics against Ebola Virus. Sci Rep. 6:24782.

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Strain	Gi ID	Protein ID	Protein_name	9mer seqeunce	CTL	Propred1	propred_count	Nhlapred	nhla_count	Propred	BCE
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AAGILDQLM	N	HLA-B3501, HLA-B5101, HLA-B5102, HLA-B5103, HLA-B*5801, HLA-B7	6	NA	0	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	ADWLLTTST	N	HLA-B3701, HLA-B40, HLA-B4403	3	NA	0	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AGILDQLMD	N	NA	0	NA	0	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AGLEFDVNQ	N	NA	0	NA	0	NA	Y
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AIIITRTNM	Y	HLA-B14, HLA-B*3501, HLA-B7, MHC-Db, MHC-Db revised	5	HLA-B51, HLA-B8, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A*01	11	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AKATGRYNL	Y	HLA-A2, HLA-A20 Cattle, HLA-B14, HLA-B*3902	4	HLA-A0202, HLA-A3, HLA-A0301, HLA-A2.1, HLA-B51, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, HLA-B35, Mamu-A01, HLA-A3301	16	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	ALNLIADWL	Y	HLA-A0201, HLA-A0205, HLA-A2, HLA-A2.1, HLA-A24, HLA-A3, HLA-B2705, HLA-B3701, HLA-B3902, HLA-B62, HLA-B7, HLA-Cw0602, MHC-Db revised	13	HLA-A2, HLA-A2.1, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A01	11	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	ALRVILAAG	Y	NA	0	HLA-A0301, HLA-B8, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A*01	11	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AMDIRHPGP	N	NA	0	NA	0	NA	N
Sudanebolavirus	gi:55770814	YP_138526.1	membrane-associatedproteinVP24	AMTRNLFPH	N	HLA-A3, MHC-Db revised	2	NA	0	NA	N

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