EbolaVCR: Computational resources for designing drugs and vaccines against EBOLA virus

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Ebola Virus Computational Resources (EbolaVCR) is the in silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. This server enlists possible vaccine candidates, therapeutic siRNAs and other related resources.

Reference: Dhanda et. al. (2016) A web-based resource for designing therapeutics against Ebola Virus. Sci Rep. 6:24782.

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Strain	Gi ID	Protein ID	Protein_name	9mer seqeunce	CTL	Propred1	propred_count	Nhlapred	nhla_count	Propred	BCE
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AAAVDAYWK	N	HLA-A*1101, HLA-A3, HLA-A68.1	3	NA	0	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AAIEALENR	Y	HLA-A20 Cattle, HLA-A3101, HLA-A3302, HLA-A68.1	4	HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A01	9	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AAVDAYWKE	N	NA	0	NA	0	NA	Y
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	ACQKSLRPA	N	HLA-B*0702	1	NA	0	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	ADGDSPQCA	N	HLA-B*3701, HLA-B40, HLA-B61	3	NA	0	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AEFQASLAD	N	HLA-B40, HLA-B61	2	NA	0	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AEMVAKYDL	Y	HLA-A0205, HLA-B2705, HLA-B3701, HLA-B40, HLA-B4403, HLA-B60, HLA-B61, HLA-Cw*0301, MHC-Kk	9	HLA-A2402, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A*01	10	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AFHQLVQVI	Y	HLA-A24, HLA-B5201, HLA-Cw0401, HLA-Cw*0602, MHC-Kd, MHC-Kk	6	HLA-A3, HLA-B8, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A01, HLA-A*3301	12	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AIEALENRL	Y	HLA-A0205, HLA-A1, HLA-A24, HLA-B3801, HLA-B3902, HLA-Cw0602, MHC-Kd	7	HLA-A2, HLA-B5401, HLA-B51, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, HLA-B35, Mamu-A01	13	NA	N
Restonebolavirus	gi:22789224	NP_690581.1	polymerasecomplexproteinVP35	AKDLKEIMY	Y	HLA-A1, HLA-A20 Cattle	2	HLA-A1, HLA-A3, HLA-Cw0401, H2-Db, H2-Dd, H2-Kb, H2-Kd, H2-Ld, HLA-G, H-2Qa, Mamu-A01	11	NA	N

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