Welcome to Home page of EbolaVCR



Ebola Virus Computational Resources (EbolaVCR) is the in silico resources developed to facilitate scientific community fighting against deadly virus EBOLA. This server enlists possible vaccine candidates, therapeutic siRNAs and other related resources.
Reference: Dhanda et. al. (2016) A web-based resource for designing therapeutics against Ebola Virus. Sci Rep. 6:24782.
Result
StrainGenemRNAsiRNAPositionEfficacy
NC_014373.1VP24CCUUCAAGGCUCUAAUCAAUUGAUUAGAGCCUUGAAGG6771.127620
NC_014373.1VP24CCUUGAUUCUGGAAUUUAAUUAAAUUCCAGAAUCAAGG7191.107826
NC_014373.1VP24GAAUUUAUUUCCUCAUUUAUAAAUGAGGAAAUAAAUUC2191.090548
NC_014373.1VP24CUUCAAGGCUCUAAUCAAAUUUGAUUAGAGCCUUGAAG6781.072863
NC_014373.1VP24CAGUCAAUUGGACGCACUAUAGUGCGUCCAAUUGACUG4831.064903
NC_014373.1VP24CUAUCAUUAGUGCGCUCUAUAGAGCGCACUAAUGAUAG4481.042553
NC_014373.1VP24CAAGGAAUUUAUUUCCUCAUGAGGAAAUAAAUUCCUUG2151.036820
NC_014373.1VP24AGACCAGUUAAUUGACCAAUUGGUCAAUUAACUGGUCU3091.016409
NC_014373.1VP24CGAUGACAAGGAAUUUAUUAAUAAAUUCCUUGUCAUCG2091.008295
NC_014373.1VP24GAUUGGCUUCUUACAACAAUUGUUGUAAGAAGCCAAUC3701.004280
NC_014373.1VP24GGAAUUUAUUUCCUCAUUUAAAUGAGGAAAUAAAUUCC2181.002253
NC_014373.1VP24CAAGGCUCUAAUCAAAAAAUUUUUUGAUUAGAGCCUUG6811.001462
NC_014373.1VP24AGGAAUUUAUUUCCUCAUUAAUGAGGAAAUAAAUUCCU2170.996240
NC_014373.1VP24GUCAAUUGGACGCACUACAUGUAGUGCGUCCAAUUGAC4850.988259
NC_014373.1VP24CCCUGAGCUUAGUCUCCGAUCGGAGACUAAGCUCAGGG3530.987482
NC_014373.1VP24GCCUUGAUUCUGGAAUUUAUAAAUUCCAGAAUCAAGGC7180.980576
NC_014373.1VP24GUCUCCGAUUGGCUUCUUAUAAGAAGCCAAUCGGAGAC3640.980509
NC_014373.1VP24GCUUCUUACAACAAACACAUGUGUUUGUUGUAAGAAGC3750.980444
NC_014373.1VP24CCUCAUUUAUUUCAAAAUUAAUUUUGAAAUAAAUGAGG2290.979900
NC_014373.1VP24CAUUUAUUUCAAAAUUCAAUUGAAUUUUGAAAUAAAUG2320.978629
NC_014373.1VP24CGAAAUUGGCACUAGAAAUAUUUCUAGUGCCAAUUUCG5370.976641
NC_014373.1VP24UGGUAUUCAAGACCAGUUAUAACUGGUCUUGAAUACCA3000.976145
NC_014373.1VP24CAUUAGUGCGCUCUAAUAUAUAUUAGAGCGCACUAAUG4520.975103
NC_014373.1VP24GCGCUCUAAUAUCUUGAAAUUUCAAGAUAUUAGAGCGC4590.974430
NC_014373.1VP24CAUGGUCGAUGACAAGGAAUUCCUUGUCAUCGACCAUG2030.972558
NC_014373.1VP24CUUCUUACAACAAACACAAUUGUGUUUGUUGUAAGAAG3760.972376
NC_014373.1VP24GGUCGAUGACAAGGAAUUUAAAUUCCUUGUCAUCGACC2060.970447
NC_014373.1VP24GUCGAUGACAAGGAAUUUAUAAAUUCCUUGUCAUCGAC2070.967682
NC_014373.1VP24CAACCUUCAAGGCUCUAAUAUUAGAGCCUUGAAGGUUG6740.965498
NC_014373.1VP24CGAUUGGCUUCUUACAACAUGUUGUAAGAAGCCAAUCG3690.962316
NC_014373.1VP24CAGCUGGUAUUCAAGACCAUGGUCUUGAAUACCAGCUG2960.958704
NC_014373.1VP24CACUAGAAAUCAUACCAUUAAUGGUAUGAUUUCUAGUG5460.952813
NC_014373.1VP24UCAAGGCUCUAAUCAAAAAUUUUUGAUUAGAGCCUUGA6800.950120
NC_014373.1VP24GAGUGAUUUGUGCACGUUUAAACGUGCACAAAUCACUC690.946921
NC_014373.1VP24UAUCAUUAGUGCGCUCUAAUUAGAGCGCACUAAUGAUA4490.946223
NC_014373.1VP24CACGCUAAAGAGCAACUGAUCAGUUGCUCUUUAGCGUG4180.945852
NC_014373.1VP24CUGCAUGAAUCAACCUUCAUGAAGGUUGAUUCAUGCAG6640.942730
NC_014373.1VP24GACCAGUUAAUUGACCAAUAUUGGUCAAUUAACUGGUC3100.936452
NC_014373.1VP24CUUAGUCUCCGAUUGGCUUAAGCCAAUCGGAGACUAAG3600.926172
NC_014373.1VP24GCAUGGUCGAUGACAAGGAUCCUUGUCAUCGACCAUGC2020.924305
NC_014373.1VP24CACUACAUGUCGUGAACUAUAGUUCACGACAUGUAGUG4970.920458
NC_014373.1VP24CAACUAAGAUGCAGGCCUUAAGGCCUGCAUCUUAGUUG7040.919164
NC_014373.1VP24GUGCGCUCUAAUAUCUUGAUCAAGAUAUUAGAGCGCAC4570.917686
NC_014373.1VP24GGGCAUUACGAGUGAUUCUAGAAUCACUCGUAAUGCCC2750.916808
NC_014373.1VP24UGCGCUCUAAUAUCUUGAAUUCAAGAUAUUAGAGCGCA4580.908452
NC_014373.1VP24GACUCUUGAGCAGUAUCGAUCGAUACUGCUCAAGAGUC5210.907493
NC_014373.1VP24ACUCUUGAGCAGUAUCGAAUUCGAUACUGCUCAAGAGU5220.907045
NC_014373.1VP24AGUGAUUUGUGCACGUUUUAAAACGUGCACAAAUCACU700.905176
NC_014373.1VP24GAAUUACAGGAGCCUGAUAUAUCAGGCUCCUGUAAUUC5980.904596
NC_014373.1VP24UACAUGUCGUGAACUACAAUUGUAGUUCACGACAUGUA5000.903283
NC_014373.1VP24UCAUUAGUGCGCUCUAAUAUAUUAGAGCGCACUAAUGA4510.902216
NC_014373.1VP24CUAGAAAUCAUACCAUUAUAUAAUGGUAUGAUUUCUAG5480.902023
NC_014373.1VP24CUGCCAUGAAUCAAAAGAAUUCUUUUGAUUCAUGGCAG6200.901108
NC_014373.1VP24AGCUGGUAUUCAAGACCAGCUGGUCUUGAAUACCAGCU2970.901019
NC_014373.1VP24UGCCAUGAAUCAAAAGAAAUUUCUUUUGAUUCAUGGCA6210.898223
NC_014373.1VP24GACAAGGAAUUUAUUUCCUAGGAAAUAAAUUCCUUGUC2130.897021
NC_014373.1VP24UCGAUGACAAGGAAUUUAUAUAAAUUCCUUGUCAUCGA2080.896997
NC_014373.1VP24GAACUACAAUGGACUCUUGCAAGAGUCCAUUGUAGUUC5100.896808
NC_014373.1VP24UCAAUUGGACGCACUACAUAUGUAGUGCGUCCAAUUGA4860.892795
NC_014373.1VP24AAUUGGCACUAGAAAUCAUAUGAUUUCUAGUGCCAAUU5400.891347
NC_014373.1VP24AGAAACCAGGACCAGUCAAUUGACUGGUCCUGGUUUCU6350.890805
NC_014373.1VP24CUCUUGAGCAGUAUCGAAAUUUCGAUACUGCUCAAGAG5230.889209
NC_014373.1VP24CUACAUGUCGUGAACUACAUGUAGUUCACGACAUGUAG4990.888005
NC_014373.1VP24GAUUCUGGCAGCUGGUAUUAAUACCAGCUGCCAGAAUC2880.887847
NC_014373.1VP24CUGAUAAAUCUGCCAUGAAUUCAUGGCAGAUUUAUCAG6110.886237
NC_014373.1VP24UCAUUUAUUUCAAAAUUCAUGAAUUUUGAAAUAAAUGA2310.884898
NC_014373.1VP24UCAACCUUCAAGGCUCUAAUUAGAGCCUUGAAGGUUGA6730.883262
NC_014373.1VP24UAUCGAAAUUGGCACUAGAUCUAGUGCCAAUUUCGAUA5340.881599
NC_014373.1VP24UAGUGCGCUCUAAUAUCUUAAGAUAUUAGAGCGCACUA4550.879184
NC_014373.1VP24GGCACUAGAAAUCAUACCAUGGUAUGAUUUCUAGUGCC5440.879079
NC_014373.1VP24UCAAAAUUCAAAUUCUACUAGUAGAAUUUGAAUUUUGA2400.876876
NC_014373.1VP24UGCAUGAAUCAACCUUCAAUUGAAGGUUGAUUCAUGCA6650.875275
NC_014373.1VP24AAUUUAUUUCCUCAUUUAUAUAAAUGAGGAAAUAAAUU2200.870979
NC_014373.1VP24CUGGUAUUCAAGACCAGUUAACUGGUCUUGAAUACCAG2990.870381
NC_014373.1VP24UUCAAGACCAGUUAAUUGAUCAAUUAACUGGUCUUGAA3050.869922
NC_014373.1VP24GCACUAGAAAUCAUACCAUAUGGUAUGAUUUCUAGUGC5450.869847
NC_014373.1VP24UGUCGUGAACUACAAUGGAUCCAUUGUAGUUCACGACA5040.868347
NC_014373.1VP24AGUGCGCUCUAAUAUCUUGCAAGAUAUUAGAGCGCACU4560.867636
NC_014373.1VP24AAGGAAUUUAUUUCCUCAUAUGAGGAAAUAAAUUCCUU2160.866979
NC_014373.1VP24CCAGGACCAGUCAAGUUCUAGAACUUGACUGGUCCUGG6400.866411
NC_014373.1VP24AAUUGGACGCACUACAUGUACAUGUAGUGCGUCCAAUU4880.864142
NC_014373.1VP24GCUGGUAUUCAAGACCAGUACUGGUCUUGAAUACCAGC2980.863256
NC_014373.1VP24CUGAGCUUAGUCUCCGAUUAAUCGGAGACUAAGCUCAG3550.862280
NC_014373.1VP24AAUGGACUCUUGAGCAGUAUACUGCUCAAGAGUCCAUU5170.862048
NC_014373.1VP24ACUAAGAUGCAGGCCUUGAUCAAGGCCUGCAUCUUAGU7060.860912
NC_014373.1VP24GACGCACUACAUGUCGUGAUCACGACAUGUAGUGCGUC4930.860591
NC_014373.1VP24UUUCAAAAUUCAAAUUCUAUAGAAUUUGAAUUUUGAAA2380.858576
NC_014373.1VP24AAAGAGCAACUGAGCUUGAUCAAGCUCAGUUGCUCUUU4240.858280
NC_014373.1VP24AUUUCCUCAUUUAUUUCAAUUGAAAUAAAUGAGGAAAU2250.857836
NC_014373.1VP24ACAUGUCGUGAACUACAAUAUUGUAGUUCACGACAUGU5010.856543
NC_014373.1VP24GAGCCUGAUAAAUCUGCCAUGGCAGAUUUAUCAGGCUC6070.855968
NC_014373.1VP24GGCCUUGAUUCUGGAAUUUAAAUUCCAGAAUCAAGGCC7170.855139
NC_014373.1VP24AUCAUUAGUGCGCUCUAAUAUUAGAGCGCACUAAUGAU4500.855129
NC_014373.1VP24CUAAGAUGCAGGCCUUGAUAUCAAGGCCUGCAUCUUAG7070.854006
NC_014373.1VP24UCCGAUUGGCUUCUUACAAUUGUAAGAAGCCAAUCGGA3670.853845
NC_014373.1VP24CCUGAUAAAUCUGCCAUGAUCAUGGCAGAUUUAUCAGG6100.852889
NC_014373.1VP24GGCUUGUUUUGAGUGAUUUAAAUCACUCAAAACAAGCC590.852785
NC_014373.1VP24GAAUCAAAAGAAACCAGGAUCCUGGUUUCUUUUGAUUC6270.852552
NC_014373.1VP24CUCUGGGCAUUACGAGUGAUCACUCGUAAUGCCCAGAG2710.851923
NC_014373.1VP24CAGUCAAGUUCUCCCUCCUAGGAGGGAGAACUUGACUG6470.850972
NC_014373.1VP24GCUUAGUCUCCGAUUGGCUAGCCAAUCGGAGACUAAGC3590.850923
NC_014373.1VP24GGCCGGAGCCCUGAGCUUAUAAGCUCAGGGCUCCGGCC3450.850663
NC_014373.1VP24GCAUGAAUCAACCUUCAAGCUUGAAGGUUGAUUCAUGC6660.850217
NC_014373.1VP24CUCCGAUUGGCUUCUUACAUGUAAGAAGCCAAUCGGAG3660.849400
NC_014373.1VP24CUUGAGCAGUAUCGAAAUUAAUUUCGAUACUGCUCAAG5250.849094
NC_014373.1VP24AUUGGCUUCUUACAACAAAUUUGUUGUAAGAAGCCAAU3710.848620
NC_014373.1VP24ACAGGAGCCUGAUAAAUCUAGAUUUAUCAGGCUCCUGU6030.847579
NC_014373.1VP24GACCAGUCAAGUUCUCCCUAGGGAGAACUUGACUGGUC6440.847166
NC_014373.1VP24UUCAAGGCUCUAAUCAAAAUUUUGAUUAGAGCCUUGAA6790.844376
NC_014373.1VP24AUUGGCACUAGAAAUCAUAUAUGAUUUCUAGUGCCAAU5410.844240
NC_014373.1VP24AAAUCUGCCAUGAAUCAAAUUUGAUUCAUGGCAGAUUU6160.838931
NC_014373.1VP24AACUACAAUGGACUCUUGAUCAAGAGUCCAUUGUAGUU5110.838404
NC_014373.1VP24UGGCUUCUUACAACAAACAUGUUUGUUGUAAGAAGCCA3730.836542
NC_014373.1VP24AUGGCUAAGGCAACAGGUAUACCUGUUGCCUUAGCCAU10.834656
NC_014373.1VP24UGGUCGAUGACAAGGAAUUAAUUCCUUGUCAUCGACCA2050.834334
NC_014373.1VP24CAUCAGUCAAUUGGACGCAUGCGUCCAAUUGACUGAUG4800.833922
NC_014373.1VP24CUAAAGAGCAACUGAGCUUAAGCUCAGUUGCUCUUUAG4220.832455
NC_014373.1VP24AGUCUCCGAUUGGCUUCUUAAGAAGCCAAUCGGAGACU3630.830605
NC_014373.1VP24AAAUUGGCACUAGAAAUCAUGAUUUCUAGUGCCAAUUU5390.830297
NC_014373.1VP24AGGCCUUGAUUCUGGAAUUAAUUCCAGAAUCAAGGCCU7160.829905
NC_014373.1VP24AGAAUUACAGGAGCCUGAUAUCAGGCUCCUGUAAUUCU5970.828518
NC_014373.1VP24CUGCAUGGUCGAUGACAAGCUUGUCAUCGACCAUGCAG2000.828136
NC_014373.1VP24AGUCAAUUGGACGCACUACGUAGUGCGUCCAAUUGACU4840.827887
NC_014373.1VP24CAGUAUCGAAAUUGGCACUAGUGCCAAUUUCGAUACUG5310.827460
NC_014373.1VP24UGAACUACAAUGGACUCUUAAGAGUCCAUUGUAGUUCA5090.825680
NC_014373.1VP24GCAGGCCUUGAUUCUGGAAUUCCAGAAUCAAGGCCUGC7140.825594
NC_014373.1VP24CCUGAGCUUAGUCUCCGAUAUCGGAGACUAAGCUCAGG3540.822292
NC_014373.1VP24ACGCACUACAUGUCGUGAAUUCACGACAUGUAGUGCGU4940.822170
NC_014373.1VP24GCAACUAAGAUGCAGGCCUAGGCCUGCAUCUUAGUUGC7030.822097
NC_014373.1VP24UCGAAAUUGGCACUAGAAAUUUCUAGUGCCAAUUUCGA5360.820819
NC_014373.1VP24UGAUAAAUCUGCCAUGAAUAUUCAUGGCAGAUUUAUCA6120.820639
NC_014373.1VP24AUUUCAAAAUUCAAAUUCUAGAAUUUGAAUUUUGAAAU2370.820615
NC_014373.1VP24CGCACUACAUGUCGUGAACGUUCACGACAUGUAGUGCG4950.819926
NC_014373.1VP24ACUAGAAAUCAUACCAUUAUAAUGGUAUGAUUUCUAGU5470.819863
NC_014373.1VP24GAAAUCAUACCAUUAUCAUAUGAUAAUGGUAUGAUUUC5510.819394
NC_014373.1VP24GUAUCGAAAUUGGCACUAGCUAGUGCCAAUUUCGAUAC5330.819260
NC_014373.1VP24GAAUCAACCUUCAAGGCUCGAGCCUUGAAGGUUGAUUC6700.819109
NC_014373.1VP24AUCGAAAUUGGCACUAGAAUUCUAGUGCCAAUUUCGAU5350.818854
NC_014373.1VP24AGUUCUCCCUCCUGCAUGAUCAUGCAGGAGGGAGAACU6530.818050
NC_014373.1VP24AAGACCAGUUAAUUGACCAUGGUCAAUUAACUGGUCUU3080.817320
NC_014373.1VP24UUCUUACAACAAACACAAAUUUGUGUUUGUUGUAAGAA3770.816590
NC_014373.1VP24GGGCUUGUUUUGAGUGAUUAAUCACUCAAAACAAGCCC580.815677
NC_014373.1VP24ACAACAAACACAAACCAUUAAUGGUUUGUGUUUGUUGU3820.815033
NC_014373.1VP24AUUACAGGAGCCUGAUAAAUUUAUCAGGCUCCUGUAAU6000.814590
NC_014373.1VP24GCCGGAGCCCUGAGCUUAGCUAAGCUCAGGGCUCCGGC3460.814452
NC_014373.1VP24GAUGACAAGGAAUUUAUUUAAAUAAAUUCCUUGUCAUC2100.813492
NC_014373.1VP24GCUAAAGAGCAACUGAGCUAGCUCAGUUGCUCUUUAGC4210.812216
NC_014373.1VP24ACCUUCAAGGCUCUAAUCAUGAUUAGAGCCUUGAAGGU6760.812012
NC_014373.1VP24GAGCUUAGUCUCCGAUUGGCCAAUCGGAGACUAAGCUC3570.811564
NC_014373.1VP24GCUUGUUUUGAGUGAUUUGCAAAUCACUCAAAACAAGC600.810286
NC_014373.1VP24AGAAAUCAUACCAUUAUCAUGAUAAUGGUAUGAUUUCU5500.809775
NC_014373.1VP24AGCAGUAUCGAAAUUGGCAUGCCAAUUUCGAUACUGCU5290.809250
NC_014373.1VP24UCCUCAUUUAUUUCAAAAUAUUUUGAAAUAAAUGAGGA2280.806899
NC_014373.1VP24CAUGAAUCAAAAGAAACCAUGGUUUCUUUUGAUUCAUG6240.806687
NC_014373.1VP24AUGGUCGAUGACAAGGAAUAUUCCUUGUCAUCGACCAU2040.806559
NC_014373.1VP24UAGAAUUACAGGAGCCUGAUCAGGCUCCUGUAAUUCUA5960.804497
NC_014373.1VP24GUGAUUUGUGCACGUUUUUAAAAACGUGCACAAAUCAC710.803626
NC_014373.1VP24CCAGAAAGGGAUGGCUCUAUAGAGCCAUCCCUUUCUGG1500.803586
NC_014373.1VP24CAAUUGGACGCACUACAUGCAUGUAGUGCGUCCAAUUG4870.803321
NC_014373.1VP24UCCUGGUAGAAUUACAGGAUCCUGUAAUUCUACCAGGA5900.802995
NC_014373.1VP24UGCUAUCAUUAGUGCGCUCGAGCGCACUAAUGAUAGCA4460.802242
NC_014373.1VP24CAAUGGACUCUUGAGCAGUACUGCUCAAGAGUCCAUUG5160.801534
NC_014373.1VP24CAACAAACACAAACCAUUUAAAUGGUUUGUGUUUGUUG3830.801459