| TEX2 | transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) | 1 |
| TF | transcription factor AP-2 beta (activating enhancer binding protein 2 beta) | 21 |
| ARNT | aryl hydrocarbon receptor nuclear translocator-like | 9 |
| TM6SF1 | T, brachyury homolog (mouse) | 22 |
| T | T, brachyury homolog (mouse) | 30 |
| CREBBP | CREB binding protein | 13 |
| CREB1 | cAMP responsive element binding protein 1 | 9 |
| CTBP1 | C-terminal binding protein 1 | 10 |
| ZFPM2 | zinc finger protein, FOG family member 2 | 1 |
| GATA4 | GATA binding protein 4 | 21 |
| HDAC1 | histone deacetylase 1 | 13 |
| HEYL | hairy/enhancer-of-split related with YRPW motif-like | 20 |
| ISL1 | ISL LIM homeobox 1 | 1 |
| TCF21 | transcription factor 4 | 30 |
| LIF | leukemia inhibitory factor | 13 |
| FLJ36070 | MEF2 activating motif and SAP domain containing transcriptional regulator | 20 |
| MED12L | mediator complex subunit 12-like | 1 |
| MED17 | mediator complex subunit 17 | 1 |
| MED22 | mediator complex subunit 22 | 9 |
| MED7 | mediator complex subunit 7 | 9 |
| NEUROD1 | neuronal differentiation 1 | 49 |
| NKX2-5 | NK2 homeobox 5 | 30 |
| NOTCH1 | notch 1 | 1 |
| PITX2 | paired-like homeodomain 2 | 63 |
| POU3F1 | POU class 3 homeobox 1 | 30 |
| POU3F2 | POU class 3 homeobox 2 | 30 |
| PPARG | peroxisome proliferator-activated receptor gamma, coactivator 1 beta | 13 |
| SIN3A | SIN3 transcription regulator homolog A (yeast) | 1 |
| SOX10 | SRY (sex determining region Y)-box 11 | 1 |
| SOX3 | SRY (sex determining region Y)-box 3 | 10 |
| TBR1 | T-box 15 | 10 |
| TBX1 | T-box 18 | 13 |
| TBX18 | T-box 20 | 10 |
| TBX5 | T-box 6 | 50 |
| TJP2 | transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) | 30 |
| YAP1 | Yes-associated protein 1 | 1 |
