CoronaVIR: Collection and compilation of Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)

Welcome to Page of Diagnostic Primers

--------------------------------------------------------------------------------------------------------------------------------------------------------

This page provides the information of Diagnostic Primers which can be used for the diagnosis of other strain of corona virus. Table contains primers for the other strains of Corona virus. These primers extracted from the Public Database of primers for viruses, i.e. MRPrimerV. Here, we have provided the Gene symbol of the gene again which primers designed, Forward Primer, Reverse Primer, Probe, Experimental conditions like Tm, Concentration, etc., specific comments for desired test from the reference study.

--------------------------------------------------------------------------------------------------------------------------------------------------------

Table representing the primers extracted from latest version of MRPrimerV for other strains of Corona virus

ID	Name of Virus	NCBI_acc_no	Gene_symbol	Gene_ID	Fwd_primer	Rev_primer	TaqMan_Probe	Fwd_TM	Rev_TM	Amplicon_size	Fwd_pos	Rev_pos	TaqMan_pos	MRPrimerV_Penality_score
1	Human coronavirus NL63	NC_005831.2	HCNV63gp1	2943501	TGCTGTGTATAGGGCGTTTGG	GCACCAACACTCCAACTCTCA	NA	60.4	60.41	132	636	767	NA	5.538
2	Human coronavirus NL63	NC_005831.2	HCNV63gp6	2943504	ATGTTCAAGAGCGTTGGCGTA	GAATCAGAACGAGTGCGAGACT	NA	60.34	60.35	364	170	533	NA	5.679
3	Human coronavirus NL63	NC_005831.2	HCNV63gp2	2943499	GCCCGTCCTCTCAACCTTATT	ACCATCCTGCAATCCAAACTG	NA	59.72	58.57	344	1028	1371	NA	6.205
4	Human coronavirus NL63	NC_005831.2	HCNV63gp5	2943503	CTCGTGTTCAAGTGGGTCAGT	ACGGACGTAGAATGCCCAAC	NA	60.13	60.11	128	473	600	NA	6.845
5	Human coronavirus NL63	NC_005831.2	HCNV63gp3	2943500	GCTGCTATTTATGGTGGTGACC	ACAACAGGCTCTTCGGCAAAA	NA	59.31	60.75	179	448	626	NA	7.5
6	Human coronavirus NL63	NC_005831.2	HCNV63gp4	2943502	CTTTGTGTTGGCAATGACCTT	TTCAGCTGGAACAGGTGCTAT	NA	57.45	59.1	145	75	219	NA	7.554
7	Human coronavirus 229E	NC_002645.1	HCoV229Egp1	918764	TGCTGAGGATGTTGTTGACCA	GCAGTGTAGCAGCGTTCAATC	NA	59.59	60.14	264	3015	3278	NA	5.638
8	Human coronavirus 229E	NC_002645.1	N	918763	CCAGAGACCTTGACCACAACT	ACTTCATCACGCACTGGTTCA	NA	59.51	59.93	334	800	1133	1082	5.79
9	Human coronavirus 229E	NC_002645.1	S	918758	TGCTGTTGAGAGTGGTGGTT	AAACCGCAAGCCAGAAACAG	NA	59.18	59.34	151	120	270	NA	5.876
10	Human coronavirus 229E	NC_002645.1	M	918762	CTTTGACACCTGGGCTAATTGG	ACCTGAACACCTGAAGCCAAT	NA	59.44	59.58	294	189	482	NA	6.034
11	Human coronavirus 229E	NC_002645.1	E	918761	CTACTCTGGTGTGTGGTGCTT	CGTTTAGGGAAAGGGTCTATGTG	NA	59.86	58.74	173	46	218	NA	6.797
12	Human coronavirus 229E	NC_002645.1	4b	918760	TAAGGCTCTGAAACCATTCGTT	ACGTCCTCTAAGAGCAACGTA	NA	57.73	58.32	115	30	144	NA	8.157
13	Human coronavirus 229E	NC_002645.1	4a	918759	ACGACAGGTTATCCAAGACGT	CCACGGTGTGATCTTGCTTTAA	NA	58.85	59.12	117	84	200	NA	8.669
14	Human coronavirus HKU1	NC_006577.2	M	3200428	TTGCCCGTATATGTTACTGTAGC	GCTCTTAACAAGGCAGTATCCA	NA	58.15	58.05	173	496	668	NA	11.41
15	Human coronavirus HKU1	NC_006577.2	orf1ab	3200429	CTGGTCAAGCGATGGAAAGTG	GAACGGAACAAGCCCATAACA	NA	59.46	58.77	250	128	377	NA	5.949
16	Human coronavirus HKU1	NC_006577.2	S	3200426	CACACTGCGGTTCTTCTTCTC	GGTGGAAACATAGCAGCAACA	NA	59.13	59.04	232	2690	2921	NA	6.022
17	Human coronavirus HKU1	NC_006577.2	N2	3200424	TTCAGATGGTCAAGGAGTTCCC	TCGGAGGGAGTAGAAGTGTCA	NA	59.44	59.38	240	215	454	NA	6.22
18	Human coronavirus HKU1	NC_006577.2	N	3200423	CTACTCCCTCCGATGTTTCGT	TGCTTAGTGACTTGCTGAGGT	NA	59.18	59.04	301	464	764	NA	6.467
19	Human coronavirus HKU1	NC_006577.2	orf4	3200427	TGGACGTTTGGAGACCTAGCT	AGACACAGCCTCAGAAACAGT	NA	60.55	58.97	263	2	264	NA	7.077
20	Human coronavirus HKU1	NC_006577.2	E	3200430	ACTGCTTGGTACATAGGACAGA	AAACGTAAGCCGAAGGTGAAA	NA	58.32	58.17	151	25	175	NA	7.168
21	Human coronavirus HKU1	NC_006577.2	HE	3200425	GTTTCCACCACTGCACCTTTT	AAATATCTGAGGCACGCTCGT	NA	59.44	59.6	124	691	814	NA	7.584
22	Turkey coronavirus	NC_010800.1	1a	6353560	CATTCCCGACCAACTCTGTGA	CGAGCATCCAGTGTGTCTACA	NA	59.93	59.73	324	66	389	NA	5.054
23	Turkey coronavirus	NC_010800.1	1ab	6353556	GTGGCGAGGCAGATGTTACTA	ATTCGATGGAGGGCTGGTTTT	NA	59.8	59.72	368	14767	15134	NA	5.155
24	Turkey coronavirus	NC_010800.1	N	6353558	GAAGCAAAGTGACGCCCAAAC	GCTGTGCATTGTTCCTCTCCT	ACCCAGACCAAAGTCACGCCCAAGTT	60.8	60.55	312	851	1162	1004	5.6
25	Turkey coronavirus	NC_010800.1	M	6353557	TTGGCCCCTTAACATTGCAGT	GTCTGGTTCACATTAGCAAGCC	TGGTCATTCAACCCCGAGTCTAGTGCCG	60.2	59.77	318	168	485	324	6.061
26	Turkey coronavirus	NC_010800.1	3b	6353552	TGACCCCTTTGAAGTCTGTGT	CGTCATCACCTGAAAACTCGT	NA	58.89	58.52	80	102	181	NA	6.289
27	Turkey coronavirus	NC_010800.1	S	6353553	TTGGGTGGGTTTGATTTGTCC	TATGGATGCCGCTGCTGTAAT	NA	58.69	59.66	315	2047	2361	NA	6.407
28	Turkey coronavirus	NC_010800.1	5a	6353562	TGTGCTAGGCGAGTGCTTTTA	AGCGATTGGGTGGGCGTATA	NA	59.73	61.1	71	121	191	NA	6.553
29	Turkey coronavirus	NC_010800.1	3c	6353555	ACGGAAGTTTCCTAACAGCAGT	AACCGCTTCTAACTCCGGTTT	NA	59.64	59.66	209	35	243	NA	6.617
30	Turkey coronavirus	NC_010800.1	5b	6353561	TTTCGCGGAGCAATAGCAAGA	TGTCTTGCCAGTTGCCTTACC	NA	60.4	60.54	197	25	221	NA	6.686
31	Turkey coronavirus	NC_010800.1	ORFX	6353559	AGAGCGTGGAAGAGTATTTGGT	GGGACCACAATCTACAACAACC	NA	59.18	59.11	214	55	268	NA	7.802
32	Turkey coronavirus	NC_010800.1	3a	6353554	AAAGAGTGTGTTTTAGCGCTTC	AGACTGTGCCAAAGCAGAAGT	NA	57.54	59.86	95	73	167	NA	8.433
33	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp1	13842724	GTCCCTGGTGATGTTCTCGTT	TCCATCTCACGCACAAACCAA	NA	59.93	60.2	374	835	1208	NA	4.492
34	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp6	13842720	AAACCTCTCGCCCTCCTTCTA	GCCTCTTTTGGGGTGTTGCTA	CACCAAGCAGACCTCGTTCACGCG	60	60.76	295	431	725	544	4.583
35	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp5	13842719	GTACCGCAGAACCAACACTTT	CATAAAACGCCCAACCTGTGT	TGGCTCCAACTGGCATTACGCTCACT	58.98	59.31	290	315	604	412	5.202
36	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp8	13842722	ACCTATCGGGCATCTCAAGCT	GTCTTGGCGGTTTGGTTGTTT	NA	60.75	60.07	181	55	235	NA	5.515
37	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp2	13842716	GCCTGTACCTGCTTTGGATTC	GGCAAAACACCCACAAACTCT	NA	59.18	59.44	318	837	1154	NA	5.58
38	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp7	13842721	GAGGCTTGCGCTTATCATTGG	AGTCCAAGAACGTCAAGAACCA	NA	59.93	59.57	134	70	203	NA	7.627
39	Rousettus bat coronavirus HKU10	NC_018871.1	D425_gp4	13842718	TGCAATCCTTTGGTTAGTTGTG	GACATCTATAACTGGGCAAGGA	NA	57.17	57.23	184	42	225	NA	8.091
40	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp01	18585637	CACCTTCATCTCGCCATACAAC	CCGCAACCTTCACTTTTCACT	CGCAGACATCGGATACAGCACACGCT	59.32	59.25	282	16313	16594	16425	4.845
41	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp03	18585628	GAGGTTAGAGCCAGCAGACAA	GCGATTCGTGGTTGGTACATG	NA	59.65	59.87	317	3472	3788	NA	5.341
42	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp07	18585633	GTTTGGTGGAAAGTGGGAAGC	AAGCGGTAGTTTTGGGGTCAT	NA	59.86	59.65	101	855	955	NA	5.384
43	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp06	18585632	CACTGGTCTTAGCACTCACGAT	CAAGTTGCCGGAGAGTAAGGT	TCCATCCAACTGTGGCGTCGTACTCG	60.03	59.93	281	296	576	423	6.132
44	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp10	18585636	CAGGCTAAGGACCATGTGGATT	AGGACCAGAAGGACAGAACTCA	NA	60.03	60.16	294	217	510	NA	6.326
45	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp04	18585630	GCTGCACCGTATTTGAGAAGT	ACAGTCAAGACGTTCGGGAAT	NA	58.85	59.39	309	430	738	NA	6.742
46	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp08	18585634	TGTCTGCATGTTGTCCTGGTT	AAGGCGCACTTCAACAATGG	NA	59.86	59.41	219	10	228	NA	6.826
47	Mink coronavirus strain WD1127	NC_023760.1	CN73_gp09	18585635	ATCCCAGGACGTGTGTGGTTT	TAAATAGCCCTACGCCTGTAGTC	NA	61.64	59.19	122	25	146	NA	9.971
48	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp03	17426946	CAACAACCTTCCACCTCCACT	GACCAGCAATGAAACCCAACC	NA	60.06	59.93	275	3579	3853	NA	4.087
49	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp02	17426945	GAAGTTGTGTGGTGGTGATGTC	GAGTGAAAGGGTGTGCTGGTA	NA	59.64	59.86	302	585	886	NA	4.391
50	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp12	17426955	TGCCAATTCTACACCCAAGCA	CACCTTCTTCCCAAACCCAGT	NA	59.93	60.06	185	152	336	NA	5.092
51	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp11	17426954	CAACCTCGCGCTGTAACTTTT	CACCTTCTTCCCAAACCCAGT	NA	59.67	60.06	367	16	382	NA	5.51
52	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp01	17426956	GTTGGTGCTCTTATGGGTGCTA	CCCAACACTTAGCCTCTGACAA	NA	60.29	60.16	292	15462	15753	NA	5.991
53	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp09	17426952	GCCTGTCGATTATGTGTGCAG	GGCGGCAGTTCTGGTTTACTA	NA	59.6	60.27	128	106	233	NA	6.051
54	"Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012		NC_022643.1"		U778_gp07	17426950	GTGCTTGGCAGAACTCTTGTTC	CTCTACAGATGTGGGCTTTGCT	NA	60.22	60.29	267	340	606	NA	6.53
55	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp05	17426948	CGCGATGCCACACCTAGTTAT	TGAAGGAGTTGTTGTGCAGCT	NA	60.47	60.13	270	132	401	NA	7.023
56	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp10	17426953	GTGGCTTGGCTACTTTCTACAG	GTTCTTCGTCCACCACTACTG	NA	58.93	58.25	371	267	637	NA	7.448
57	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp08	17426951	CATACAGTCGTGGGAGTTTCAC	CGCTTGGTGCGATTATGTGTAA	NA	58.94	59.58	241	442	682	NA	7.506
58	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	59.8	U778_gp06	17426949	ACAGCGTCTAACATCCAGTGG	TGAAGGAGTTGTTGTGCAGCT	NA	59.8	60.13	113	112	224	NA	7.72
59	Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-216/GER/2012	NC_022643.1	U778_gp04	17426947	GCGTCGATTATGAAGGTGCCAT	GCGGTCTTGTGTGGCATCATA	NA	61.32	60.95	143	86	228	NA	8.658
60	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	S	14254594	CAGGACGCCCAAATAGACAGA	GCATCGCAAAGACCATAAGCA	NA	59.72	59.53	287	3187	3473	NA	4.552
61	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf1ab	14254602	TTAGGCGGTCTTCACTTGCTT	TGGAGTCGAGGGTAGAAGGTT	NA	59.66	59.65	305	20019	20323	NA	4.812
62	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	E	14254599	CTTGGTGTGTATGGCTTTCCT	CGGGCTGAACTAACAGGGTAT	NA	58.12	59.44	83	81	163	NA	5.322
63	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	N	14254601	ACGCGGAACCCTAACAATGAT	ATCACCTCCTACTGCTCCGAT	CGCGGCACTTCTCCAGGTCCATCT	59.8	59.86	228	409	636	588	5.417
64	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf4b	14254597	CTGCGCCATGAAGACCTTAGT	TCCCTGAACGAGAAGCCAATC	NA	60.34	59.8	390	124	513	NA	5.861
65	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf5	14254598	TGGCTTTCTCGGCGTCTTTAT	GGCTATCAGGCAACTTCCAGT	NA	59.8	60	296	2	297	NA	5.873
66	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	M	14254600	GTGCAGAGTATCCGGCTGTTT	GCTTTGCCGCTTCACCATTTT	NA	60.61	60.81	270	286	555	NA	6.209
67	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf4a	14254596	GTACATCCCTAAACCCACAGCT	ATGGCTCCTCTTCCTCGCTTT	NA	59.69	61.23	251	69	319	NA	6.418
68	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf8b	19910005	ACGCGGAACCCTAACAATGAT	TTGACTATTGCCTCCAGTCCC	NA	59.8	59.17	102	213	314	NA	7.583
69	Middle East respiratory syndrome coronavirus (MERS-CoV)	NC_019843.3	orf3	14254595	ACTGCATCCTCAAAACCTCTCT	TGACTCAAGATCGACAGAAACTG	NA	59.1	58.22	180	58	237	NA	9.788
70	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	N	16607893	ATGGTGTCTACTGGGTTGCTG	AATTGCGTCCTGGTCTCTTGT	CCTACCTCTCCAGGGTCTTCTCGTGCAA	59.73	59.66	308	281	588	411	4.285
71	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	S	16607888	GGTGGTGCGCTTTTAGGTTTT	AGGTGTGGGTTGGGTAGTATC	NA	59.86	58.55	303	2008	2310	NA	4.976
72	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	PP1a	16607889	GCAGATTTTCCGCATACCACT	TTAGAGCAAGCCAGACACGAG	NA	58.91	59.8	323	6388	6710	NA	5.037
73	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	PP1ab	16607894	TAGTCGTTCCCTTGGTCTCCA	GTCGCGCCTACTACAATCCTT	NA	59.93	60.13	271	16778	17048	NA	5.401
74	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	M	16607892	GCTTGAAAATGCTGGTGCTGT	CGTGACTCCTACAGCAACCTT	NA	60.2	59.93	347	137	483	NA	5.517
75	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	NS3	16607890	AGCGATGCTGTTGTTGTTGAC	CGCCAGGCATAGTAACAGACA	NA	59.74	60.07	269	76	344	NA	5.528
76	Bat coronavirus CDPHE15/USA/2006	NC_022103.1	E	16607891	AACCTCTGCTTCACTTGTCACA	ACTCCATACATCCTACCTACAGG	NA	59.83	58.03	71	106	176	NA	8.13
77	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp1	20522562	GGCGTGGATGTTTGTGTGTTT	CCACTAAGCCTCGCATCGAAT	NA	60.13	60.47	278	19893	20170	NA	4.776
78	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp4	20522556	GGAGGCTTTCTTTGTCTGGGAT	CTGCGGTTGTGTGGTCTTCTA	NA	60.23	60.2	427	235	661	NA	4.957
79	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp2	20522554	AACCACAACCGCAGAAACAAC	TGCAGAGAAGCACACCCAATA	NA	59.87	59.38	203	1107	1309	NA	5.017
80	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp9	20522561	ACAAAGAACGGCAAACCACAG	TGCTGAAGAAGCGGATGATGT	NA	59.6	59.8	270	268	537	NA	5.032
81	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp3	20522555	TTGAGACTGCCGATGTTGGTT	ACCTTTTGGGTGACTGCGATA	NA	59.93	59.38	235	2639	2873	NA	5.188
82	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp6	20522558	GGCGATAGCAACAACACCATT	GGTAAATGGCAGCAAGCACAA	NA	59.46	59.93	211	7	217	NA	5.546
83	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp5	20522557	CTCACAAGAGACAGGCACAGT	ACAGCCGCAAACAAGTAAGGA	NA	59.86	60.2	104	15	118	NA	5.643
84	Bat Hp-betacoronavirus/Zhejiang2013	NC_025217.1	NA39_gp8	20522560	ACCACGGACGACATAGAGTTG	GCCGATTAGCCGTTGATGATG	NA	59.54	59.74	102	71	172	NA	6.183
85	Munia coronavirus HKU13-3514	NC_011550.1	S	7040226	GGCACCTCTACAACAACTCCT	ACCCGCTGAAACCCATACAAA	NA	59.58	59.93	302	1234	1535	NA	4.234
86	Munia coronavirus HKU13-3514	NC_011550.1	orf1ab	7040225	GACCTTCACATCACACCCAGT	ACGAACACCGCCAATACCAA	NA	59.86	59.97	310	9066	9375	NA	4.285
87	Munia coronavirus HKU13-3514	NC_011550.1	N	7040230	CTGCCGCTTAGATTTCCACCT	TGTTAGTGCTCCATCCTGCTG	TTTCTCAGGTGTTTGGCACTCGCTCCA	60.34	59.8	408	370	777	598	5.73
88	Munia coronavirus HKU13-3514	NC_011550.1	M	7040228	CCCGGAGGAGCTGTTTTCATT	CGACGGAGTAACAACCACCAT	NA	60.55	60.27	312	190	501	NA	5.976
89	Munia coronavirus HKU13-3514	NC_011550.1	E	7040227	AGCCGAAGACTGGGCTATAAC	TCCGAGTCAGAGACTGTTTGG	NA	59.32	59.13	201	6	206	NA	6.155
90	Munia coronavirus HKU13-3514	NC_011550.1	NS7b	7040232	GGTTTACCTTGGCTTGTGATC	TGGTGGCCGTTACTTTTGAAA	NA	57.06	58.36	121	124	244	NA	6.985
91	Munia coronavirus HKU13-3514	NC_011550.1	NS6	7040229	CATCTTTGAGCTTTGCGACACT	TGATCCACGGACTGAGCCATA	NA	59.71	60.41	160	72	231	NA	7.35
92	Munia coronavirus HKU13-3514	NC_011550.1	NS7c	7040233	TGGGACCCCTTATTGACCTAGA	GACTGGCTCTCTGGCTTGTAT	NA	59.42	59.45	106	83	188	NA	7.386
93	Munia coronavirus HKU13-3514	NC_011550.1	NS7a	7040231	TGAGGAGATTGCTGAGACTGGA	CCTGCTTCTGGAACACGGTAAT	NA	60.29	60.55	146	153	298	NA	7.402
94	Thrush coronavirus HKU12-600	NC_011549.1	orf1ab	7040223	AGCACCCACTCTTTGGATTCC	CAACCACACACAGCCAACAAA	NA	60	60	318	8601	8918	NA	4.462
95	Thrush coronavirus HKU12-600	NC_011549.1	S	7040215	ATTGGGTTGGTGGGTTGGTA	AGGTTTGGTAGGGTGAGGTTT	NA	58.85	58.59	127	990	1116	NA	4.906
96	Thrush coronavirus HKU12-600	NC_011549.1	N	7040219	GCATCGTGGTTTCAGGTTCTC	TCGCGCTTTCTTGGTTGGTTA	CGCAACCCCAACAACCCTAAACATGCA	59.46	60.54	491	31	521	339	5.338
97	Thrush coronavirus HKU12-600	NC_011549.1	M	7040217	CCAGCCTTTTACCCTTGTTGTG	TCTCGCTCGTCAGTATCAATGG	NA	59.9	59.72	417	135	551	NA	5.8
98	Thrush coronavirus HKU12-600	NC_011549.1	NS7c	7040222	CCAGCATGTTATACCGCAAGAG	GTGATTCTGTGCAAGAGTAGCC	NA	59.39	59.26	80	111	190	NA	6.184
99	Thrush coronavirus HKU12-600	NC_011549.1	E	7040216	TCCATCACCATACCTGGACAA	TCTGGAGTAGGATTGGGCTTG	NA	58.19	58.9	182	19	200	NA	6.213
100	Thrush coronavirus HKU12-600	NC_011549.1	NS6	7040218	TGCAACTGCCTTTACCAGGTT	GACAAGTGGGTCAAGAAGCTC	NA	60.13	58.78	90	4	93	NA	6.569
101	Thrush coronavirus HKU12-600	NC_011549.1	NS7a	7040220	CCTATGTGCCTAGTTCGTGTTG	GCTCCTCCCAATTAACAGAACC	NA	59	58.91	273	53	325	NA	7.609
102	Thrush coronavirus HKU12-600	NC_011549.1	NS7b	7040221	GCTCTACTTCAGCAGGGTTTAC	TTAAGTTAGTAGGGGTGCAGCA	NA	58.66	58.84	144	109	252	NA	8.807
103	Bovine coronavirus	NC_003045.1	orf1ab	921688	GCCTAAAGCAACTCGCAACAA	GCAACACACTGCCAATCACAT	NA	59.93	59.93	243	3198	3440	NA	5.334
104	Bovine coronavirus	NC_003045.1	S	921689	GTCGGTGCCCTCTCCATTAAA	CCTACACACAAAGACCCATCCA	NA	60	59.89	474	1020	1493	NA	5.818
105	Bovine coronavirus	NC_003045.1	N	921687	AGAGCGTCCTCTGGAAATCGT	GGAACGTCGGTTGTGTCTGTA	NA	60.95	60.2	291	34	324	NA	5.999
106	Bovine coronavirus	NC_003045.1	NS	921690	AACAGCGCCTCACATTAGTCT	TGGAAAGTGCAGCATCAGTGA	NA	59.46	59.93	293	132	424	NA	6.254
107	Bovine coronavirus	NC_003045.1	HE	921684	GTTGTTGATTCGCGGTGGAA	CATAGGGGTAGAGAGGCCAGA	NA	59.33	59.78	244	862	1105	NA	7.221
108	Bovine coronavirus	NC_003045.1	M	921686	ACTACACCAGCACCAGTTTACA	TGCATGTAAAGATGACCACGTA	NA	59.31	57.57	458	13	470	NA	7.647
109	Bovine coronavirus	NC_003045.1	BCoVgp06	1724649	ACAACCATTGAAGGTGCAGAT	AAAACCAGTGGTGCTAGTGT	NA	57.86	57.01	105	13	117	NA	9.016
110	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp07	22807884	CTTTCTCTTACAGACACAGTGTG	CCAAGGCTGCTACCACTATAAG	NA	57.03	58.19	94	10	103	NA	10.04
111	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp04	22807881	ACTGCCCTCAATGCCTATGTG	TCCAACATCACCAGCCAAACA	NA	60.13	60.13	261	3265	3525	NA	4.277
112	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp01	22807888	TGTGCTCTTGCTTGGGTTGT	GCTGCTTTCATTGGAGGCTTT	NA	60.11	59.65	401	1984	2384	NA	5.111
113	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp10	22807887	GGTGTTGTTTGGGTTGCTAGTC	TCCTTGGCTGTCTGCTTTGTA	NA	59.9	59.31	356	418	773	NA	5.31
114	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp03	22807880	GTTCCGACGAAGGCTATCTGT	ACGGGCCAAACACTACTAACA	NA	59.8	59.32	287	811	1097	NA	5.584
115	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp02	22807879	TTCGATGATGCGGCTCTTACA	GCAGGGGCAGATTGATTGATG	NA	59.6	59.59	260	229	488	NA	5.699
116	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp08	22807885	GGACTGCGGATGAGGCAATTA	CACATAAGCGGGAAGGTCAGA	NA	60.41	59.72	485	41	525	NA	6.371
117	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp06	22807883	GATCCCTGGGCTGTAGACAAC	GCTCGCCAGAGTATGAACTCA	NA	60.07	59.8	287	4	290	NA	7.219
118	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp09	22807886	AGGATGTCTCATACGCCAGG	TGGGCTCTTCTACCTCTGCTA	NA	58.69	59.44	125	15	139	NA	7.56
119	Betacoronavirus HKU24 strain HKU24-R05005I	NC_026011.1	SF15_gp05	22807882	TACCACAAACCCATCCGCAAG	ACCCGTTGTAAGAATAGGCTTGG	NA	60.61	60.37	223	120	342	NA	8.185
120	Chinook salmon bafinivirus isolate NIDO	NC_026812.1	XM24_gp1	24092865	CTCACACCCAACACACTCCAA	GCGAGAAACGATAGGGCAGAA	NA	60.34	60.4	330	3130	3459	NA	3.583
121	Chinook salmon bafinivirus isolate NIDO	NC_026812.1	XM24_gp2	24092861	CGACCAAGCCCAAAACAACAT	TGTGTGACCTGAGATGTTGCA	NA	59.86	59.59	280	1386	1665	NA	4.319
122	Chinook salmon bafinivirus isolate NIDO	NC_026812.1	XM24_gp3	24092862	GCCCTACTCCAAACCTACACA	ACTGGCTAACAAACCGACTGA	CCGCTGCAAACTACCTCTACGACACAAGA	59.3	59.32	246	2296	2541	2368	4.337
123	Chinook salmon bafinivirus isolate NIDO	NC_026812.1	XM24_gp5	24092864	CTATGTCTATGCCCGCTTCCTT	ATCTTGGAGTTCACCGCGTTT	AACAGCCCAAACCACAGCCCAAACC	59.9	60.27	233	29	261	94	4.954
124	Chinook salmon bafinivirus isolate NIDO	NC_026812.1	XM24_gp4	24092863	CCGCAGAAGATCCCAACATTG	CGAGAAAGCAAGGAGCAAGAC	CCCTGCTCAATAAGATTCCACTGCTGCCAA	59.53	59.47	335	26	360	211	5.262
125	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	M	26613668	CCTTTGTCGCATTCAGCCTTT	ACCTGAACACCTGAAGCCAAT	NA	59.66	59.58	259	227	485	NA	5.272
126	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	orf1a	26613665	TCGGGTTCCGTCTTGTTTTGT	CAGGTTCTGGGTTTTGTTGCA	NA	60.13	59.44	139	3427	3565	NA	5.425
127	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	S	26613664	TTGCTGTTGAGAGTGGTGGTT	TAAACCGCGACCAGAAACAGA	NA	59.79	59.66	152	116	267	NA	5.481
128	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	N	26613669	CGCATTGAAGGTGTTGTCTGG	CTCGGCTCTGTGACTTTGACT	CTGACTCTCGTGCTCCTTCGCGTTCT	60	59.93	190	286	475	427	5.584
129	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	orf1ab	26613670	ACACACTCTTCGCAACCACAA	GCAGGATCTGTCACGAACTGT	NA	60.4	60.27	196	13144	13339	NA	5.739
130	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	orf4	26613666	TAGTTTCGCGCCAGGTTATCC	CCCTCCGTAGAAGCACACAAA	NA	60.2	60.2	383	77	459	NA	5.817
131	Camel alphacoronavirus isolate camel/Riyadh/Ry141/2015	NC_028752.1	E	26613667	ATGTAATACTGTGGTGCGTAGT	TGTCTGGGAAAGGGTCTATGTG	NA	57.04	59.17	177	41	217	NA	7.439
132	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp3	26626388	CTGGGTGGCTCTTGTAATGGA	AGTGGCTGTATGTGGGTTTGA	NA	59.65	59.31	171	895	1065	NA	4.28
133	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp1	26626395	ATGTAGCACCGCCAGTCAAAA	GCCAGAAAGACCACAACAAGC	NA	60.27	60.2	227	566	792	NA	4.87
134	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp8	26626393	AGAGGCAGGCAACAATCCAAT	TCTGGTCGCCATCTTCCTTTG	NA	60	60.07	376	529	904	NA	5.242
135	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp7	26626392	CCCCTTGTTTTGGCTCTTACG	TCGATGTTCATACCACCTGCA	CTTCCTCTCGAAGGTGTGCCAACTGGT	59.39	59.18	323	277	599	501	5.592
136	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp2	26626387	TTACAGGTGTCCAGCCGAGAT	AGAAGACGCCGAGCAACATAA	NA	60.61	59.8	255	4095	4349	NA	5.658
137	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp6	26626391	TTCCTAGGGCATTGACTGTCA	AAGGAGTGCTCCATCGTGTTT	NA	58.47	59.66	236	8	243	NA	5.688
138	Swine enteric coronavirus strain Italy/213306/2009	NC_028806.1	AVT88_gp5	26626390	GAGCTGCACCGTTTAAGAGAAG	GTGTGGTCACCCTCTTCTTCTT	NA	59.52	59.83	295	425	719	NA	6.503
139	Bat coronavirus HKU8	NC_010438.1	ORF1ab	6020263	TCGTCACCCGAACCACAAAAT	ATCACAACCGCACTCATCACA	NA	60.2	60	249	2959	3207	NA	3.868
140	Bat coronavirus HKU8	NC_010438.1	S	6020262	ACCACGCCATTTTACGCATTC	CAGCACGAACAACAACAGGAG	NA	59.87	59.94	233	1497	1729	NA	4.26
141	Bat coronavirus HKU8	NC_010438.1	ORF7	6020265	CACCTGCTCAACTCAACCCT	GCTCACAAGAACCACGAAATCC	NA	59.82	60.03	262	124	385	NA	5.658
142	Bat coronavirus HKU8	NC_010438.1	N	6020264	CTTATGGGCCTCGGTTTTCAAC	AGACTTGTTGGGGACACGTTT	CCAAGGACTCGCGCTCAAAATCGCC	59.77	59.79	177	640	816	724	5.956
143	Bat coronavirus HKU8	NC_010438.1	M	6020266	GTGGAACATCTCCGAAACTGGA	GGTCCAATTAACCCCGAAGCTA	ATGGCCCCTTGTGCTTGCGCTGTC	60.22	60.03	195	109	303	239	6.625
144	Bat coronavirus HKU8	NC_010438.1	ORF3	6020261	GGCGCTTATTTGGATTCATGCA	GCCCCTAACAGCAACATAAAGC	NA	60.16	60.09	258	265	522	NA	6.656
145	Bat coronavirus HKU8	NC_010438.1	E	6020260	GTGCAGCTGTTGTTTTCTTGTC	CTGGAAGAGGATCTATTCGCATG	NA	59.07	58.69	109	103	211	NA	7.919
146	Bat coronavirus HKU4-1	NC_009019.1	orf1ab	4835998	GGCAGCAGAGACACATAAGGA	CGATAGGCCCGAAAGATGTGT	NA	59.72	60.13	236	14018	14253	NA	4.592
147	Bat coronavirus HKU4-1	NC_009019.1	S	4835991	AAATGGGTTCTGTGGGTCTGG	TCAAGGAGTGGAGGTGGTAAGT	NA	59.93	60.16	339	3336	3674	NA	4.772
148	Bat coronavirus HKU4-1	NC_009019.1	N	4835993	ACGACCTGCTCCCAATAACAC	TCTTGTCTCCGCCAGTATCCA	ACACAGGGCTCACCCAACACGGTAAA	60.07	60.34	147	99	245	130	5.263
149	Bat coronavirus HKU4-1	NC_009019.1	NS3d	4835995	TTTTGCCCTCGTTCGGCTATT	ATTCGGTCAGCAGTCCACAAG	NA	60.34	60.34	293	55	347	NA	5.485
150	Bat coronavirus HKU4-1	NC_009019.1	NS3c	4835994	CCTGAGGCTGGTGAATGCTTT	TAATTGGGAAGCGGGCAAGTG	TGGTAGATCCATTCCACTTGCCCGCTTC	60.82	60.95	406	409	814	779	5.937
151	Bat coronavirus HKU4-1	NC_009019.1	E	4835997	TGCAATGTGCTTCGGGTGTTA	AGGAGGAAAGGGTGGACGATT	NA	60.54	60.55	113	122	234	NA	6.295
152	Bat coronavirus HKU4-1	NC_009019.1	M	4835996	TCTGCTCAATGTCCCAATCGG	ACCAAAGTGCATACCAGCCAT	NA	60.13	60	118	351	468	NA	6.344
153	Bat coronavirus HKU4-1	NC_009019.1	NS3a	4835990	GCATGTCTGGCACTCTCTTTC	ACGGAAAACCCAGCATCAAAA	NA	59.19	58.69	184	89	272	NA	7.032
154	Bat coronavirus HKU4-1	NC_009019.1	NS3b	4835992	GGACTACGTCTCTTTGCTTAACC	AAGATGTCGGAGGCAGAACTAC	NA	59.01	59.58	303	3	305	NA	7.59
155	Bat coronavirus HKU5-1	NC_009020.1	orf1ab	4836003	TCTGTGGGCTTTGTCGTTGTT	ACGGTGGTAGAGTTGGGTGTA	NA	60.41	60.2	290	2056	2345	NA	4.404
156	Bat coronavirus HKU5-1	NC_009020.1	S	4836002	GCGTACAACTCCAGGTCCATT	TCGGCACAGCAACAACAAATC	NA	60.27	60	251	2091	2341	NA	4.551
157	Bat coronavirus HKU5-1	NC_009020.1	N	4836000	GAGATGTAGTGGGTGCTGGAA	CAGATGCTGAGGGAGCAAGTT	ACAAGCGCGTCGCCACCAAAGGAT	59.37	60.27	300	611	910	751	5.254
158	Bat coronavirus HKU5-1	NC_009020.1	M	4836001	TACTGGCTCTTGGTGGTCTTTC	AGTGCGAGTTCTTGGTCTTGT	CGCAAAACCAAATGTGCTGATAGCCCTGAA	59.7	59.59	336	315	650	509	5.302
159	Bat coronavirus HKU5-1	NC_009020.1	NS3c	4836006	AGCGCCGTTTTACTCCTGTAG	ACGAGCACCAATGACCAAAGT	NA	60.14	60.2	299	134	432	NA	5.496
160	Bat coronavirus HKU5-1	NC_009020.1	NS3d	4836007	TATGTTGCCGCTCTTGTGGTT	GTATAACAACCCCGCCTGCAA	NA	60.27	60.89	319	109	427	NA	5.564
161	Bat coronavirus HKU5-1	NC_009020.1	NS3b	4836005	GATTACGTGTCGCTGCTCAAC	GTGCTCGAAGGCTGTGCTATA	NA	59.87	60.13	294	4	297	NA	5.853
162	Bat coronavirus HKU5-1	NC_009020.1	NS3a	4836004	CGAACTTATGATGCGTGTGCAA	AGAGGTGTCGTGAGCAGTAGT	TGCCTGAGCACTGTTCTACCCTTGTTGGT	60.1	60.27	256	48	303	136	6.07
163	Bat coronavirus HKU5-1	NC_009020.1	E	4836008	TGTGCAGTGTGTTTCTGGTTG	ATAGGGTGGATGGCTCTCTTG	NA	59.27	58.69	109	120	228	NA	6.463
164	SARS coronavirus	NC_004718.3	sars6	1489673	TGCTGCATACAACCGCTACC	CTGCTATTGTAACCTGGAAGTCA	NA	60.46	58.09	138	61	198	NA	11.66
165	SARS coronavirus	NC_004718.3	orf1ab	1489680	TGCTACACACCTTCCAAACTCA	TCATCGCATCAACACCACAGA	TGCTACCTCTGCTTGCGTTCTTGCTGC	59.57	59.73	388	8617	9004	8654	5.546
166	SARS coronavirus	NC_004718.3	N	1489678	GGTGGTGACGGCAAAATGAAA	ACTACGTGATGAGGAGCGAGA	TGCTGCCACCGTGCTACAACTTCCT	59.86	60.14	285	289	573	464	5.738
167	SARS coronavirus	NC_004718.3	S	1489668	GCGACATTTCAGGCATTAACG	CAGCAAGAACCACAAGAGCAT	NA	58.48	59.04	262	3446	3707	NA	6.206
168	SARS coronavirus	NC_004718.3	sars9b	1489679	CCCGCATTACATTTGGTGGAC	CTGAGTGAGAGCTGTGAACCA	NA	59.8	59.59	137	31	167	NA	6.323
169	SARS coronavirus	NC_004718.3	sars8b	1489677	GCTTGGCTTTGTGCTCTAGGA	AATGCAGCAGTTTGGTGACCT	NA	60.55	60.48	161	55	215	NA	6.807
170	SARS coronavirus	NC_004718.3	M	1489672	CTTGTTTTGTGCTTGCTGCTG	CGGAGAGGCACATTGAGAAGAA	TCCTTCAGGCTGTTTGCTCGTACCCG	59.34	60.29	187	185	371	291	6.854
171	SARS coronavirus	NC_004718.3	sars7a	1489674	TCAGGAGTGTGTTAGAGGTACGA	AGTACCGTCAGCACAAGCAAA	NA	59.99	60.2	154	60	213	NA	7.093
172	SARS coronavirus	NC_004718.3	sars3a	1489669	GAAGTGCAAATCCAAGAACCCAT	AGAGCCGTCGATTGTGTGTAT	NA	59.67	59.26	361	393	753	NA	7.888
173	SARS coronavirus	NC_004718.3	E	1489671	TAGCCATCCTTACTGCGCTTC	AACACGCGAGTAGACGTAAA	NA	59.93	57.06	95	92	186	NA	7.934
174	SARS coronavirus	NC_004718.3	sars3b	1489670	ATACACACAATCGACGGCTCT	GTTCGTACTCACTTTCTTGTGCT	NA	59.26	59.13	115	312	426	NA	9.983
175	Bat coronavirus 1A	NC_010437.1	ORF1ab	6020270	ACCAGAACAACCCTCATACGC	CCACCGTACATAACACCTTCCA	NA	60.07	59.96	277	9713	9989	NA	5.065
176	Bat coronavirus 1A	NC_010437.1	S	6020275	CGCTGCTACCATTCCAAATCG	ACAGCAATAGCCAACCACACA	NA	59.94	60.2	243	3738	3980	NA	5.141
177	Bat coronavirus 1A	NC_010437.1	M	6020272	CCGCTGAAAGAGGTGATGGAA	GGGTTGAATGCCCAGAATGACT	NA	60.27	60.82	323	106	428	NA	5.481
178	Bat coronavirus 1A	NC_010437.1	N	6020271	GCTGCTTTGTTCTTTGGTTCG	CAGAGTCACCAAGAGGATCGA	CTCAACTGAATCCTGCTGCCCCTGTGT	58.8	58.83	304	859	1162	1054	5.732
179	Bat coronavirus 1A	NC_010437.1	ORF3	6020274	GTCTCATCTCGCACCCATTCA	GCAAGCCTAAAAGCAAGACACA	NA	60.07	59.9	135	96	230	NA	6.579
180	Bat coronavirus 1A	NC_010437.1	E	6020273	GTGGCTTTTGTTTTGTGTATCTG	ACTGGAAGCGGTTCAATTTGC	NA	57.02	59.73	165	48	212	NA	7.831
181	Porcine coronavirus HKU15	NC_016990.1	orf1ab	11945619	ACTCAGCACACGCACTTAACA	GCCATCGGCAACTCCTACTAA	NA	60.2	59.79	290	15295	15584	NA	4.486
182	Porcine coronavirus HKU15	NC_016990.1	S	11945613	ACTGCCACTGACCACATCTCT	CCGACAAATGACCCCGATACA	NA	60.82	60.07	289	406	694	NA	5.346
183	Porcine coronavirus HKU15	NC_016990.1	M	11945615	TGACGCAGAAGAGTGGCAAAT	CCTGTGGCGGATTTCTAACTGA	TTCTGCTTTGGCTGCTCCAACCCTTCA	60.27	60.29	470	6	475	118	6.211
184	Porcine coronavirus HKU15	NC_016990.1	NS6	11945616	GCAATAAGCGGCACATCAGAA	ACTTGGAGCGATGGTCGAATG	NA	59.53	60.47	217	44	260	NA	6.227
185	Porcine coronavirus HKU15	NC_016990.1	N	11945617	AAGACGGGTATGGCTGATCCT	TGGTTTGGTGGGTGGCTCATA	NA	60.41	61.38	225	661	885	NA	6.641
186	Porcine coronavirus HKU15	NC_016990.1	NS7	11945618	CCAGGAAACGCGACCAATCT	AGGATCAGCCATACCCGTCTT	NA	60.61	60.41	173	415	587	NA	7.168
187	Rabbit coronavirus HKU14	NC_016990.1	RbCoV-HKU14_gp01	13230771	CCTGATGCTATGGACGCTGTT	AGGTTTTATCCCGCACACACT	NA	60.41	59.66	301	256	556	NA	4.935
188	Rabbit coronavirus HKU14	NC_016990.1	N	11948238	TGCCACAAAGCCTCAACAAGT	GGTTCATCAGCATTCCCAGACA	NA	60.68	60.55	291	741	1031	NA	5.686
189	Rabbit coronavirus HKU14	NC_016990.1	S	11948234	GTCGGTGCCCTCTCCATTAAA	CCAGAGCCACTACCAACACAA	AGCTCCCACCACTTTCTGTCCATGCAA	60	60.13	486	1017	1502	1439	5.724
190	Rabbit coronavirus HKU14	NC_016990.1	M	11948237	TGCCAGCTTATGTGACTGTTG	CCATGCCAGTACCCTTTTGAG	NA	58.59	58.83	156	509	664	NA	7.39
191	Rabbit coronavirus HKU14	NC_016990.1	HE	11948233	TCATGGGGATGCTGGTTTTACT	CGTAAGGGTAAAGAGGCCAGA	NA	59.43	59.1	122	984	1105	NA	7.46
192	Rabbit coronavirus HKU14	NC_016990.1	NS2a3	11948231	TCAATCCCTCATCACCGGCTA	TTATGTTATTCCCACCCAGTGG	NA	60.41	57.51	104	26	129	NA	7.763
193	Rabbit coronavirus HKU14	NC_016990.1	NS2a1	11948229	GGCTGTCGCTTATGCTGATATG	AACACAAAACCCTCAAAATGGG	NA	59.52	57.59	72	3	74	NA	8.483
194	Rabbit coronavirus HKU14	NC_016990.1	NS5a	11948235	TGGAGACCTGAGAAGAAATACCT	CGCCAGGTAATAAAGTCAACAGC	NA	58.07	60.12	293	10	302	NA	9.238
195	White-eye coronavirus HKU16	NC_016991.1	S	11945622	CTTACAACTACCCCACGGCAT	CCATCAGCACAGACACCCAAT	NA	60	60.55	282	1419	1700	NA	4.314
196	White-eye coronavirus HKU16	NC_016991.1	orf1ab	11945629	CCCGTCCCATCCAAAATACCA	ACGCCGACCACAGAAACAAT	NA	59.99	60.25	231	15933	16163	NA	4.518
197	White-eye coronavirus HKU16	NC_016991.1	N	11945626	AGCAAAGGGAGCAAACACTGA	TGTAATGTCGCCTGCCTGAAA	NA	60.13	60	478	297	774	NA	5.769
198	White-eye coronavirus HKU16	NC_016991.1	M	11945624	CCCATTCTAGCTCCAGTCGTT	CGTTGCCTGAACCTGATGTAG	NA	59.45	58.93	247	388	634	NA	6.369
199	White-eye coronavirus HKU16	NC_016991.1	NS7a	11945627	CCATTAAGGCCCAGGAAAACC	ATCAGTGTTTGCTCCCTTTGC	NA	59.09	59.12	203	88	290	NA	6.675
200	White-eye coronavirus HKU16	NC_016991.1	NS6	11945625	GCTCAGTTCGCTTGTCCAAT	GTGAGTAAGCAAGACAGCGAAC	NA	58.76	59.78	104	21	124	NA	6.701
201	White-eye coronavirus HKU16	NC_016991.1	E	11945623	TGACTGGTCCATTACCATACCC	ACGTGCACCTAGGAAACATTT	NA	58.97	57.88	136	12	147	NA	7.647
202	White-eye coronavirus HKU16	NC_016991.1	NS7b	11945628	TGTCCCGTAGACAAACAAAACT	ACAAGGCACTAGCGTATCCC	NA	57.87	59.26	71	41	111	NA	8.268
203	Magpie-robin coronavirus HKU18	NC_016993.1	NS7c	11945650	ATGCTTCGCATGATTCTTCAGT	AGCAAGCAGTATCACAAGGAAG	NA	58.48	58.41	101	53	153	NA	10.54
204	Magpie-robin coronavirus HKU18	NC_016993.1	orf1ab	11945642	AACACAACCACCCACTACGAC	GACCACAAATGCCACCACAAG	NA	60.2	60.2	300	4621	4920	NA	3.841
205	Magpie-robin coronavirus HKU18	NC_016993.1	S	11945643	GGAACCACCAATACCACACCT	AAACCGCAACCTGACTAGCAA	NA	59.85	60.2	303	1340	1642	NA	4.759
206	Magpie-robin coronavirus HKU18	NC_016993.1	M	11945645	TAGCAGCGCCGTCTTTATCAT	GACTTTGGAGGCGAGGTTACA	TGCCGTGCTCACCTTCCTATCATGGCT	59.67	59.93	288	192	479	224	5.154
207	Magpie-robin coronavirus HKU18	NC_016993.1	NS7b	11945649	TCGCCCTACCAGCCCTATATT	GTAAACACTGTGCGTGCTGAA	CTCACCCCATGCCATTCTCCGCTACT	59.93	59.6	243	109	351	182	6.151
208	Magpie-robin coronavirus HKU18	NC_016993.1	NS7a	11945648	TCACATCTCAGTGGGGTTCTT	AAAATGCGCCTTCGTATTCGT	NA	58.4	59	79	28	106	NA	6.283
209	Magpie-robin coronavirus HKU18	NC_016993.1	N	11945647	GGGCGCTCACATTGACTTTTA	GGCTTGCTATTCTTCTGCTTCC	TGAATCTGACCAATCCTCCAAGCCCAAGCA	59.11	59.57	196	767	962	905	6.445
210	Magpie-robin coronavirus HKU18	NC_016993.1	NS6	11945646	TCCATTTGTTAAGCCTCGTTGC	TGGAGAGATGGGCGGATGATA	NA	59.52	59.93	168	90	257	NA	7.477
211	Magpie-robin coronavirus HKU18	NC_016993.1	E	11945644	CATAACCATCCCCGGCCAATA	TGAGTTTTGCACATGCTAGGC	NA	59.85	59.2	101	21	121	NA	8.179
212	Night-heron coronavirus HKU19	NC_016994.1	N	11945658	ACACCCACTACTTCCTCTCACT	TGCGTTTTGGGGTTTGTTCTG	TCAGCACCGAGCAGAACAAACCCCA	59.89	59.87	198	336	533	501	4.47
213	Night-heron coronavirus HKU19	NC_016994.1	orf1ab	11945653	ACTTCTTGGTGTTGGCGGTAA	TATGCTTGCTGTGCGTCCTT	NA	59.86	60.04	363	9162	9524	NA	4.786
214	Night-heron coronavirus HKU19	NC_016994.1	S	11945654	TCTCAACTCAACGCTTCCAGG	GCAACCAAAACAACCTCCACAA	NA	60	60.29	319	3321	3639	NA	5.235
215	Night-heron coronavirus HKU19	NC_016994.1	M	11945656	GCTCTCACTCCTGTCCTTGTAA	CGTAATTGCTGCCTGTTGTCA	NA	59.37	59.39	241	391	631	NA	5.713
216	Night-heron coronavirus HKU19	NC_016994.1	NS6	11945657	ACTCTTGTGCGTAGTGATCCC	ACCCACTCTGCATTGAACGAA	NA	59.53	59.93	110	127	236	NA	5.875
217	Night-heron coronavirus HKU19	NC_016994.1	NS7a	11945659	TGCTCGTAAGGTTGTTGGCTA	ACATAGGCCACACTGCTTCAC	NA	59.39	60.34	125	123	247	NA	6.914
218	Night-heron coronavirus HKU19	NC_016994.1	E	11945655	TTTTCACGCGCACCTACACA	CATGGTGCCAGTCGTTTCGA	NA	60.53	60.88	132	113	244	NA	7.14
219	Night-heron coronavirus HKU19	NC_016994.1	NS7b	11945660	GCATTTGACACAGACGAGCAG	CCTTCGTGCAGTGTTAGTTAGC	NA	60.07	59.52	105	172	276	NA	7.268
220	Wigeon coronavirus HKU20	NC_016995.1	orf1ab	11945664	GGTAGTGTCGGAGGCATTTGA	AGAGTAGGGCTGAGGGTCAAT	NA	60	59.71	334	2046	2379	NA	5.068
221	Wigeon coronavirus HKU20	NC_016995.1	N	11945669	CCACTGCCACCCTCTTATTCC	TCTCCCAAACCCGTCTTCTCA	TGCACAGTCAGCGGAACCTCAACGT	60.34	60.48	488	181	668	470	5.14
222	Wigeon coronavirus HKU20	NC_016995.1	S	11945665	ACCCACAACACTACCAACAAC	GCATCCACAAGACCAACCTTT	NA	58.37	58.96	286	110	395	NA	5.263
223	Wigeon coronavirus HKU20	NC_016995.1	NS6	11945668	TGGACACTCCAACACATCACT	GCCAGTGCAAAAGCAAAACAC	NA	58.97	59.87	75	48	122	NA	5.406
224	Wigeon coronavirus HKU20	NC_016995.1	M	11945667	GGTTACCATCTGGACTGCTGTT	ATCTGCTTCGCAACACACTGT	AGTACCACTAGACTACCTTCCCACAGCGC	60.22	60.54	303	153	455	365	6.216
225	Wigeon coronavirus HKU20	NC_016995.1	NS7d	11945673	TGACGACTGCATTAGGGTATTCC	CCAACAAAGGCAACACAGACG	NA	59.93	60.47	145	47	191	NA	6.957
226	Wigeon coronavirus HKU20	NC_016995.1	NS7b	11945671	CCTTTTGAGGTGGCTGTTTGG	TCATCGGTGTCAAGTTCTTCGT	NA	59.86	59.71	101	136	236	NA	7.437
227	Wigeon coronavirus HKU20	NC_016995.1	E	11945666	AATCCCAGGCTCGGTTGTTAT	GGCGTAAATCTCGGAACAAGA	NA	59.17	58.31	177	21	197	NA	7.675
228	Wigeon coronavirus HKU20	NC_016995.1	NS7a	11945670	AGATCCACTACAGGTGGCAGA	AAGGCACTCCTTCAACCCAG	NA	60	59.6	104	21	124	NA	8.416
229	Wigeon coronavirus HKU20	NC_016995.1	NS7c	11945672	TCTAGCTCGCCTTTGGCTTGA	ACGTCACACCTAACACATTCACT	NA	61.49	59.93	162	18	179	NA	9.189
230	Common-moorhen coronavirus HKU21	NC_016996.1	N	11945681	CAATCCCCAGAACCCTAAGCA	CCGTATCAGCAGAGCCAACAT	CGTGCTGCCTCTGCTCCCGGAAC	59.64	60.41	323	342	664	519	5.21
231	Common-moorhen coronavirus HKU21	NC_016996.1	orf1ab	11945676	AGCTTAGTAGCTCAGGCAGAAC	GGCAATACACCACCCTTCACT	NA	59.58	60.2	299	583	881	NA	5.474
232	Common-moorhen coronavirus HKU21	NC_016996.1	S	11945677	CGCAGGAAGATTTACCCAGCA	ATAAGCCACAACAGCCACCAA	NA	60.61	60.2	405	3170	3574	NA	5.907
233	Common-moorhen coronavirus HKU21	NC_016996.1	NS7c	11945684	GACGAGGAATCGGAGAGTGAT	AATACAGTGCCCAGGACCATC	NA	58.98	59.52	283	30	312	NA	6.38
234	Common-moorhen coronavirus HKU21	NC_016996.1	M	11945679	GGCTTTTGCAGCCACTTACTTT	GGGAAAAGGACCAGGCAGATT	NA	60.16	60.2	303	161	463	NA	6.609
235	Common-moorhen coronavirus HKU21	NC_016996.1	E	11945678	GGCGATTACGTTATTGCAGCA	AAGAGTACCGTAGCACCCTTA	NA	59.6	57.66	122	31	152	NA	7.143
236	Common-moorhen coronavirus HKU21	NC_016996.1	NS7b	11945683	ATTCAGAACTTCAGGGTTGCT	TCACTCTCCGATTCCTCGTCA	NA	57.23	60.07	79	80	158	NA	7.614
237	Common-moorhen coronavirus HKU21	NC_016996.1	NS7a	11945682	GTTTCAACGTTAACCCACACTT	CGTAGTTTACGAACAAGGGCTA	NA	57.55	58.08	134	73	206	NA	8.899
238	Sparrow coronavirus HKU17,	NC_016992.1	S	11945632	GGGATGGAACAACACGAAAGG	TGACACAAAAGGCGGGAGAAT	NA	59.39	59.93	277	405	681	NA	4.444
239	Sparrow coronavirus HKU17,	NC_016992.1	NS7a	11945637	CCACATACCCTCACTCAAGCA	ACTGGAAAATGGCTACGCAGT	NA	59.65	60	264	14	277	NA	4.664
240	Sparrow coronavirus HKU17,	NC_016992.1	orf1ab	11945639	CCACTCGCACAATACCACATC	AACCTCAGCGTCCGATACTTG	NA	59.27	59.87	318	2020	2337	NA	4.904
241	Sparrow coronavirus HKU17,	NC_016992.1	N	11945636	ACCCCAGAGGCACTAACAATC	TGAGCGCATCCTTTAGTCGTT	AGCAACTTTCAGGCGGGAGCAATCACC	59.45	59.8	360	485	844	747	5.674
242	Sparrow coronavirus HKU17,	NC_016992.1	NS7b	11945638	TTCATCTGCCTCACCTTCTTCG	GGGCGTACGACAAGAATCCAT	NA	60.09	60.41	122	31	152	NA	5.683
243	Sparrow coronavirus HKU17,	NC_016992.1	M	11945634	CTTCTCCAGCCATTCACCCTT	TCTTGTGGTGGTGACTTAGCC	NA	59.92	59.66	347	130	476	NA	5.98
244	Sparrow coronavirus HKU17,	NC_016992.1	NS6	11945635	GTCTCGTGGTTCTTGCTAATGC	ACTTGGAGTGATGGTCTGTAGAG	NA	59.84	58.99	139	122	260	NA	7.65
245	Sparrow coronavirus HKU17,	NC_016992.1	E	11945633	CCGACGATTGGGCTGTAACC	ACTAGGTAACGAGCACCCAGA	NA	61.02	60	148	8	155	NA	8.518
246	Bat coronavirus HKU9-1	NC_009021.1	orf1ab	4836014	GTCATTGCAGGGGCTTTGTTT	CAGCAACACCACCAAAAGCAT	NA	59.86	60.13	332	1389	1720	NA	4.917
247	Bat coronavirus HKU9-1	NC_009021.1	N	4836017	GGAGGGTAATTTTGGGGATCGT	GGCGGTCTCTTCCTTCTTCTTT	CGCCTACAAAGATTTCCCTCCTACTGAGCC	60.02	60.22	292	882	1173	1109	5.207
248	Bat coronavirus HKU9-1	NC_009021.1	NS7b	4836011	GCAGTTGCATGGTGTTTAGCT	AATCACGGTCTTCGCTCAACA	TGTGTCACCGCCCCTATTTGCTGCT	59.66	60	286	118	403	190	5.418
249	Bat coronavirus HKU9-1	NC_009021.1	S	4836012	CGTTACTTGTGCGGTGATTCC	TAGGCGGCAATACAGCGATAC	NA	59.8	60.07	400	2182	2581	NA	5.599
250	Bat coronavirus HKU9-1	NC_009021.1	M	4836016	GCTCATTCCGCCTACTCTGTA	CCATCCTCTGTGGTATTCTGCA	NA	59.25	59.76	346	296	641	NA	6.302
251	Bat coronavirus HKU9-1	NC_009021.1	NS7a	4836010	GTCTGCTTCCTGTGTTACTGGT	TGGCAACCACCAACAACCTTA	NA	60.16	60.06	249	105	353	NA	6.355
252	Bat coronavirus HKU9-1	NC_009021.1	NS3	4836013	GTTGCCCTGTCTTGTTATGCT	TCGAACGCTCAACAGGGAAT	NA	58.76	59.4	322	94	415	NA	6.598
253	Bat coronavirus HKU9-1	NC_009021.1	E	4836015	GCGCATTGCTCCTGATTTTACA	TCGCGTTCGTTCAAGAGTGAT	NA	60.09	60.07	124	92	215	NA	7.729
254	Bat coronavirus HKU2	NC_009988.1	N	5741383	TCTCGCAATCAAAGCCAAAGC	ACTTACGCACGTCCTCTTCAG	TCTCCTGCACCAGCCCCTAAACCG	59.8	59.8	268	466	733	642	5.087
255	Bat coronavirus HKU2	NC_009988.1	BCHV2_gp2	5741384	AGGACGCTAAGACAGCCAAAG	GCAGAGCCAACAATACCACAC	NA	60.07	59.73	178	3359	3536	NA	5.127
256	Bat coronavirus HKU2	NC_009988.1	NS3	5741385	TGGTCCCAAGGATGAGGCTAT	CAACGACACCGCCACAATAAA	NA	60.06	59.67	212	69	280	NA	5.152
257	Bat coronavirus HKU2	NC_009988.1	S	5741389	GGTGCTGGTGTTTTGCTTGAC	GCCGGTCGTCTCTATTTTGCT	NA	60.74	60.67	198	1861	2058	NA	5.451
258	Bat coronavirus HKU2	NC_009988.1	M	5741387	TGGTGGTTCTTCTCCTTCAGC	TGGCGACAGTCACAAATTGC	CATTTAACCCCGAAACAGACGCCATTGCTG	59.66	59.42	295	232	526	340	6.15
259	Bat coronavirus HKU2	NC_009988.1	NS7a	5741382	TGTGTATGATGTGCTGCTGTG	GGTCAAAGACCTCAACAGCAA	NA	58.67	58.62	228	23	250	NA	6.943
260	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp14	6264439	AAAGAACCCAGCCGACAAGAG	TTCGCTCCATCTCCTTTCACC	NA	60.27	59.8	342	24	365	NA	4.465
261	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp02	6264438	GTGCGCCCCTTTCTAATTGTG	AGGCTTCGGGTCTATGGGTAA	NA	60.07	60.06	326	11378	11703	NA	4.534
262	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp01	6264444	CAAGAGCTGGACGAGAACGAT	CCCACTCACAGCAACCCTTAA	NA	60.07	60.13	280	12006	12285	NA	4.736
263	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp12	6264436	CTGTCGTTGGCTTTGTGCTT	ATTGGCATTCAGGGTGTGTCT	NA	59.54	59.65	359	38	396	NA	4.793
264	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp05	6264441	ACACTTCCACCACTCCAACAC	AACGCGCAACATTAGCATCAC	NA	60.13	60.2	450	236	685	NA	5.189
265	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp13	6264435	TTACGCTGGGGATGTTGTGAT	CTCTGCTGTATCCTCTGGTGTT	NA	59.45	59.43	391	90	480	NA	5.195
266	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp03	6264443	ATGAAATGTGGTGGTGGTCCT	TGCTGAAGCTGGTCGAACTAA	NA	59.3	59.39	311	497	807	NA	5.513
267	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp10	6264446	TGACCTTGGCCTCTTCTTACG	TATGGCCGCTAACAACACCTT	NA	59.46	59.72	312	29	340	NA	5.615
268	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp09	6264433	AGCTGGTTGTGATGGTATCGG	AAAGTAACGGTGTGGCAAAGC	TGACGGCCCAGGCTTTGCCACAC	59.87	59.67	283	276	558	526	5.685
269	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp08	6264445	CATTTGTGGGGTAAGTCGGTCA	GATAAGGCGCATACCGAAGCT	NA	60.49	60.54	321	142	462	NA	5.969
270	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp11	6264442	AATGAGGAAACACCCGCGATT	AAGCCATCTCCCGGTATCTCA	NA	60.34	60.13	128	43	170	NA	6.729
271	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp07	6264440	CACTCGTGCTATAAGGCGTACT	TCCTCGTAAAATGGCTCTTCCT	NA	59.9	58.9	183	246	428	NA	7.217
272	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp06	6264437	AGAGTTGCTGAAGTGCTGAATC	GTCAAAGGTTCTGGGTTTCCA	NA	58.68	58.25	143	250	392	NA	8.161
273	Beluga Whale coronavirus SW1	NC_010646.1	CoVSW1_gp04	6264434	GCCATTGACGTGTGCCTATTA	AATTTGGGTTGTTTCGGGAGT	NA	58.64	58.06	101	118	218	NA	8.714
274	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	ORF1ab	9714832	GTGGTGTTTGTTTGGGTGGTT	GTGTTGCACGATTACGCTTGT	NA	59.65	60	396	6764	7159	NA	3.601
275	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	N	9714831	CGTGGTGGTGATGGTAAGATGA	TGCTGCTGCTAGGTGTTGAAT	TGGCAGTCAAGCCTCCTCGCGTTCT	60.03	60	325	280	604	530	4.418
276	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	S	9714824	TCAACGGACTTACAGGCACTG	GCAGCACCAATCAAACAACCA	NA	60	60.13	340	1589	1928	NA	4.455
277	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	ORF3	9714825	ACAGCGTCCATCCCTTTACAG	TCTGACAAGAAGCCTGCCAAA	NA	59.8	59.86	285	94	378	NA	5.456
278	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	M	9714827	TCCTCCTACGGAGACCATTACC	GCCAAAGAAGCCAGAGAAACAC	NA	60.16	60.22	170	21	190	NA	6.18
279	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	ORF7a	9714829	GGCAACTCACCTTATCACCCT	AGACCGGGCACGTAATTGAAA	NA	59.65	60	120	124	243	NA	6.441
280	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	E	9714826	TAGCCATCCTTACTGCGCTTC	GAACCTCCTGAGAGGAATTCAA	NA	59.93	57.35	123	92	214	NA	8.203
281	Bat coronavirus BM48-31/BGR/2008	NC_014470.1	ORF6	9714828	TCCAAGTTACCGTAGCAGAGT	CCATAGGTTCTTCTTCGTCTAGT	NA	58.22	57.08	153	20	172	NA	8.636
282	Rat coronavirus Parker	NC_012936.1	PRCV_gp09	11273173	CCCAAAGCCCCAAAGAAAGAGA	ATCCAACCCATCAGGCACAAC	CAGCCCAAAAGTGCCGTGCAGCG	60.7	60.61	181	1170	1350	1242	4.946
283	Rat coronavirus Parker	NC_012936.1	PRCV_gp02	11273166	TAGTGGGCGAAAGTGAACCTG	CGTCAAGCACAACATCAAGCA	NA	60	59.93	399	2273	2671	NA	5.053
284	Rat coronavirus Parker	NC_012936.1	PRCV_gp05	11273169	GGCTCGGCTTCATACTTTCCT	ATGCACACCGGAGACCTTAAA	NA	60.07	59.38	212	352	563	NA	5.281
285	Rat coronavirus Parker	NC_012936.1	PRCV_gp10	11273174	CCGAGCGTGGACAAAATAATGG	TGGTATCCGCCTGACTATTTGC	NA	60.16	60.22	375	37	411	NA	5.557
286	Rat coronavirus Parker	NC_012936.1	PRCV_gp04	11273168	TCATTCCAGGGGCAGTTCTTC	GCGCTTAGGCTTACGAAGACA	NA	59.72	60.67	250	642	891	NA	5.694
287	Rat coronavirus Parker	NC_012936.1	PRCV_gp01	11273175	CCTGCGTTGTCTGTAGTTCTCA	ATTTAAGGCGCTCGGTACACT	NA	60.22	59.53	384	16144	16527	NA	5.899
288	Rat coronavirus Parker	NC_012936.1	PRCV_gp03	11273167	CTCCGAAAGATGGGTTGCACT	CCCACGCTTCTTCATCATCCT	NA	60.55	60.07	352	340	691	NA	5.926
289	Rat coronavirus Parker	NC_012936.1	PRCV_gp06	11273170	AGGCTAAATTGGCTGCTGTCT	GCCGAAAGGTGTATGGACGA	NA	59.72	60.04	351	20	370	NA	6.618
290	Rat coronavirus Parker	NC_012936.1	PRCV_gp08	11273172	TGGCTTCTCTTTGTCTGATTTGC	TTGTTTGAGGGCAGTCGGTAA	NA	59.5	59.59	159	492	650	NA	7.534
291	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp2	11266523	GCCTGATTTGCCACTTGATGT	AAGAACCACAACAACCGCAAC	NA	59.38	59.87	299	3747	4045	NA	4.951
292	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp6	11266522	GGCGATGAGTCAGTTGAGGTT	AGGTTTTGGTGTTGGGGTTCT	TCCCAAGCCTCAGCGTAAAGTCAAACGT	60.27	59.71	327	739	1065	1013	4.992
293	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp1	11266518	ATTGGCGTTGGTGGTAGGAAA	ACGCTCTGGAGGACAGAACTA	NA	59.93	60	299	10726	11024	NA	5.071
294	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp5	11266521	GGGTTTTCTTCGCATTCAGCA	CCAGCACAGAGACAGACAGAA	NA	59.66	59.59	153	227	379	NA	5.314
295	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp3	11266519	CGTTCCTCTGAGACAAGCTACA	ACGTAATGGCTTCCACCTTCA	NA	59.7	59.38	357	105	461	NA	6.727
296	Scotophilus bat coronavirus 512	NC_009657.1	Sc-BatCoV-512_gp4	11266520	TGTAAATGCGATTCTCTGGCTT	CAACCGGTGGCAAGTAAAACA	NA	58.14	59.52	100	33	132	NA	7.291