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This module allow users to predict the half-life of natural peptide based on structure submitted. Users can draw or sketch structure of their molecule using web based chemical drawing software Marvin Applet or load and open any SDF structure of their peptide in Marvin Applet. If a user wants to edit any structure in his/her own favorite editor/software (like Pymol etc), he/she can do it and open that structure here in marvin sketch and submit the structure here. In order to facilitate users, an example structure is provided that can be loaded in marvin by clicking on "Load Example" button. For further information please visit HELP page.

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1097.pdb OpenBabel12201617343D 46 48 0 0 1 0 0 0 0 0999 V2000 5.2620 -3.4830 6.6310 N 0 0 0 0 0 0 0 0 0 0 0 0 4.2460 -3.4120 5.5970 C 0 0 1 0 0 0 0 0 0 0 0 0 4.8480 -2.7040 4.3650 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9160 -2.5200 3.1580 C 0 0 0 0 0 0 0 0 0 0 0 0 2.4850 -2.0230 3.4130 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6890 -1.6840 2.1370 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8030 -4.7820 5.2920 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5630 -5.5780 4.8070 O 0 0 0 0 0 0 0 0 0 0 0 0 2.5160 -5.2030 5.5130 N 0 0 0 0 0 0 0 0 0 0 0 0 1.4700 -4.4700 6.2420 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9190 -5.5220 7.2200 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0450 -6.8840 6.4740 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0850 -6.5450 5.3450 C 0 0 1 0 0 0 0 0 0 0 0 0 1.5610 -6.7970 3.9110 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3650 -6.8140 3.6590 O 0 0 0 0 0 0 0 0 0 0 0 0 2.5080 -6.9070 2.9830 N 0 0 0 0 0 0 0 0 0 0 0 0 2.1350 -6.6520 1.6160 C 0 0 1 0 0 0 0 0 0 0 0 0 1.8890 -5.1340 1.4440 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9310 -4.8630 0.3100 C 0 0 0 0 0 0 0 0 0 0 0 0 1.2810 -4.5750 -1.0220 C 0 0 0 0 0 0 0 0 0 0 0 0 0.3180 -4.4550 -2.0420 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0770 -4.5890 -1.7700 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4980 -4.9210 -0.4710 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4610 -5.1720 0.4910 C 0 0 0 0 0 0 0 0 0 0 0 0 3.0680 -7.2590 0.5610 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2630 -7.5530 0.8430 O 0 0 0 0 0 0 0 0 0 0 0 0 2.6000 -7.4640 -0.7000 N 0 0 0 0 0 0 0 0 0 0 0 0 3.4260 -7.9800 -1.8560 C 0 0 1 0 0 0 0 0 0 0 0 0 3.5270 -9.4760 -1.8620 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6420 -10.0770 -2.6530 C 0 0 0 0 0 0 0 0 0 0 0 0 5.9890 -9.8140 -2.2650 C 0 0 0 0 0 0 0 0 0 0 0 0 7.0120 -10.4820 -2.8430 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8290 -11.1420 -4.0490 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4800 -11.4060 -4.4490 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4220 -10.8780 -3.7750 C 0 0 0 0 0 0 0 0 0 0 0 0 2.8900 -7.5370 -3.2430 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7160 -7.2390 -3.4020 O 0 0 0 0 0 0 0 0 0 0 0 0 3.7900 -7.4820 -4.2450 N 0 0 0 0 0 0 0 0 0 0 0 0 3.5570 -7.0060 -5.6860 C 0 0 1 0 0 0 0 0 0 0 0 0 4.1950 -5.6430 -5.9060 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0860 -5.1270 -7.3140 C 0 0 0 0 0 0 0 0 0 0 0 0 5.1400 -5.1250 -8.0130 O 0 0 0 0 0 0 0 0 0 0 0 0 2.9850 -4.7900 -7.7710 O 0 0 0 0 0 0 0 0 0 0 0 0 4.1300 -7.9660 -6.7130 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9270 -8.8730 -6.3570 O 0 0 0 0 0 0 0 0 0 0 0 0 3.8180 -7.8710 -7.8980 O 0 0 0 0 0 0 0 0 0 0 0 0 2 3 1 6 0 0 0 2 1 1 0 0 0 0 4 5 1 0 0 0 0 4 3 1 0 0 0 0 6 4 1 0 0 0 0 7 9 1 0 0 0 0 7 2 1 0 0 0 0 8 7 2 0 0 0 0 9 10 1 0 0 0 0 10 11 1 0 0 0 0 12 11 1 0 0 0 0 13 14 1 6 0 0 0 13 9 1 0 0 0 0 13 12 1 0 0 0 0 15 14 2 0 0 0 0 16 14 1 0 0 0 0 17 25 1 1 0 0 0 17 16 1 0 0 0 0 18 17 1 0 0 0 0 19 24 1 0 0 0 0 19 18 1 0 0 0 0 20 19 2 0 0 0 0 21 22 2 0 0 0 0 21 20 1 0 0 0 0 22 23 1 0 0 0 0 23 24 2 0 0 0 0 25 26 2 0 0 0 0 27 25 1 0 0 0 0 28 36 1 6 0 0 0 28 27 1 0 0 0 0 29 28 1 0 0 0 0 30 31 1 0 0 0 0 30 29 1 0 0 0 0 32 31 2 0 0 0 0 33 32 1 0 0 0 0 34 33 2 0 0 0 0 34 35 1 0 0 0 0 35 30 2 0 0 0 0 37 36 2 0 0 0 0 38 36 1 0 0 0 0 39 44 1 1 0 0 0 39 38 1 0 0 0 0 40 39 1 0 0 0 0 41 40 1 0 0 0 0 42 41 2 0 0 0 0 43 41 1 0 0 0 0 44 45 1 0 0 0 0 46 44 2 0 0 0 0 M END > <PFRMAT> TS > <TARGET> 1097 > <AUTHOR> Raghava-GPS-serv > <METHOD> PEPSTR > <MODEL> 1 REFINED > <PARENT> N/A $$$$ cml csmol csrdf csrxn cssdf mol mrv mrv with selection name rdf rxn smarts smiles sdf sybyl

*(Example Sequence--LPFFD)

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