Tri-Nucleotide Based Geary Auto-Correlation


This module allow users to compute trinucleotide Geary Auto-Correlation of nucleotide sequences. User may enter either one sequence in one line or sequences in FASTA format. For more information see HELP page.

Paste Nucleotide sequence(s) in FASTA format:
OR Submit sequence file: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. Start: This allows to cut the user specified portion from the starting of the sequence
      3. End: This allows to cut the user specified portion from the end of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from start and end, and performs calculation on the remaining fragment
Whole   Start        End       Split       Rest:    Start   End      
    Select desired lag value:
Choose Lag    This allows users to generate the dipeptides with desired order, such as order 1 means dipeptides made of consecutive residues in the provided seqeunce i.e. no gap.

Select desired Physicochemical Properties: This allows to select the properties whose composition is desired by the users.
                                       
 B_DNAse                  B_Consensus                  Trinucleotide GC Content                 
 Nucleosome positioning      Consensus_roll      Consensus-Rigid    
 Dnase I      Dnase I-Rigid      MW-Daltons    
 MW-kg      Nucleosome      Nucleosome-Rigid  

                                                                                                                         




































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