Binary Profile of Tri-Nucleotide Properties


This module allow users to compute binary profile of Trinucleotide properties of all DNA sequences. User may enter either one sequence in one line or sequences in FASTA format. For more information see HELP page.

Paste Nucleotide sequence(s) in FASTA format:
OR Submit sequence file: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. Start: This allows to cut the user specified portion from the starting of the sequence
      3. End: This allows to cut the user specified portion from the end of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from start and end, and performs calculation on the remaining fragment
Whole   Start        End       Split       Rest:    Start   End      
    Select desired lag value:
Choose Lag    This allows users to generate the dipeptides with desired order, such as order 1 means dipeptides made of consecutive residues in the provided seqeunce i.e. no gap.

Select desired Physicochemical Properties: This allows to select the properties whose composition is desired by the users.
                                       
 B_DNAse                  B_Consensus                  Trinucleotide GC Content                 
 Nucleosome positioning      Consensus_roll      Consensus-Rigid    
 Dnase I      Dnase I-Rigid      MW-Daltons    
 MW-kg      Nucleosome      Nucleosome-Rigid  

                                                                                                                         




































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