Parallel Correlation Pseudo Dinucleotide Composition


This module allow users to compute paralle correlation pseudo dinucleotide composition of nucleotide sequences. User may enter either one sequence in one line or sequences in FASTA format. For more information see HELP page.

Paste Nucleotide sequence(s) in FASTA format:
OR Submit sequence file: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. Start: This allows to cut the user specified portion from the starting of the sequence
      3. End: This allows to cut the user specified portion from the end of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from start and end, and performs calculation on the remaining fragment
Whole   Start        End       Split       Rest:    Start   End      
    Select desired lambda value:
Choose Lambda    This allows users to generate the dipeptides with desired order, such as order 1 means dipeptides made of consecutive residues in the provided seqeunce i.e. no gap.   Provide Weight   Provide the value of Weight (0-1) by default (0.05)

Select desired Physicochemical Properties: This allows to select the properties whose composition is desired by the users.

 Base Stacking      PI Deformability      beta-DNA twist      Dinucleotide GC      A-philicity      Propeller Twist    
 DSFE      DSDE      DNA denaturation      BS      P-DNA twist      SE of Z-DNA  
 ABA-Transition    Breslauer_dG    Breslauer_dH    Breslauer_dS    E-Interaction    Hartman(TFE)  
 HC-Transition    IBA-Transition    LBZ-Transition    P-Interaction    SantaLucia_dG  
 SantaLucia_dH    SantaLucia_dS    Sarai_flexibility    Stability    tacking_energy  
 Sugimoto_dG    Sugimoto_dH    Sugimoto_dS    WC-Interaction    Twist  
 Tilt    Roll    Shift    Slide    Rise  


                                                                                                                         








































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