Dinucleotide Based Geary Auto-Correlation


This module allow users to compute dinucleotide Geary Auto-Correlation of DNA sequences. User may enter either one sequence in one line or sequences in FASTA format. For more information see HELP page.

Paste Nucleotide sequence(s) in FASTA format:
OR Submit sequence file: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. Start: This allows to cut the user specified portion from the starting of the sequence
      3. End: This allows to cut the user specified portion from the end of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from start and end, and performs calculation on the remaining fragment
Whole   Start        End       Split       Rest:    Start   End      
    Select desired lag value:
Choose Lag    This allows users to generate the dipeptides with desired order, such as order 1 means dipeptides made of consecutive residues in the provided seqeunce i.e. no gap.

Select desired Physicochemical Properties: This allows to select the properties whose composition is desired by the users.
                                       
 Base Stacking      PI Deformability      beta-DNA twist      Dinucleotide GC      A-philicity      Propeller Twist    
 DSFE      DSDE      DNA denaturation      BS      P-DNA twist      SE of Z-DNA  
 ABA-Transition    Breslauer_dG    Breslauer_dH    Breslauer_dS    E-Interaction    Hartman(TFE)  
 HC-Transition    IBA-Transition    LBZ-Transition    P-Interaction    SantaLucia_dG  
 SantaLucia_dH    SantaLucia_dS    Sarai_flexibility    Stability    tacking_energy  
 Sugimoto_dG    Sugimoto_dH    Sugimoto_dS    WC-Interaction    Twist  
 Tilt    Roll    Shift    Slide    Rise  


                                                                                                                         













































         Raghava's group    GPSR Docker    Health Portal    COPid    Pfeature    IIIT-Delhi   

Scroll to Top