Similarity Search


This module is designed for performing similarity-based search of query sequences provided by the users with the experimentally verified antibody-class specific B-cell epitopes. Here we used Smith-Waterman algorithm for performing similarity-based search against IEDB epitopes (only IgG-,IgE-and IgA- specific epitopes). For more information see HELP page.


E-mail Address (Optional):             Sequence/Job Name (Optional):    

(if you want to receive your result via email)


Type or paste your antigen/protein sequence    


OR Upload Sequence file


Chose format of protein sequence: FASTA format Plain sequences (Amino acids in single letter code)

Select type of epitopes to be searched
IgG-specific B-cell epitope
IgE-specific B-cell epitope
IgA-specific B-cell epitope