Tertiary Structure of COVID-19 Proteins
--------------------------------------------------------------------------------------------------------------------------------------------------------
This page maintain tertiary structure of COVID-19 proteins. First we searched in PDB if its crystallized structure is available. In case structure is not available than we predict structure of protein using Phyre 2.0 server; validated using PROCHECK server.
AlphaFold predicte are available from HERE
--------------------------------------------------------------------------------------------------------------------------------------------------------
| Accession ID | Name | Sequence | Structure | Ramachandran Plot | Qmean4 Score | Template_ID | % Identity | Template_Fold | Template_Superfamily | Template_Family |
|---|---|---|---|---|---|---|---|---|---|---|
| YP_009725307.1 | RNA-dependent RNA-polymerase | Click to download | Click to download the PDB file |  Click to download |
0.71 | 1XR7 | 97% | NA | NA | NA |
| YP_009725301.1 | 3C-like proteinase | Click to download | Click to download the PDB file |  Click to download |
-0.88 | 2DUC | 96% | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral cysteine protease of trypsin fold |
| QHD43418.1 | Envelop Protein | Click to download | Click to download the PDB file |  Click to download |
-7.32 | 5X29 | 91% | NA | NA | NA |
| QHD43419.1 | Membrane Glycoprotein | Click to download | Click to download the PDB file |  Click to download |
-13.35 | 3SC0 | 25% | NA | NA | NA |
| QHD43423.2 | Nucleocapsid Phosphoprotein | Click to download | Click to download the PDB file |  Click to download |
-12.03 | 1SSK | 82% | Coronavirus RNA-binding domain | Coronavirus RNA-binding domain | Coronavirus RNA-binding domain |
| QHD43417.1 | ORF3a Protein | Click to download | Click to download the PDB file |  Click to download |
-9.00 | 2O5H | 24% | NMB0513-like | NMB0513-like | NMB0513-like |
| QHD43420.1 | ORF6 Protein | Click to download | Click to download the PDB file |  Click to download |
-3.17 | 3QKS | 54% | NA | NA | NA |
| QHD43421.1 | ORF7a Protein | Click to download | Click to download the PDB file |  Click to download |
-4.69 | 1YO4 | 92% | NA | NA | NA |
| QHD43422.1 | ORF8 Protein | Click to download | Click to download the PDB file |  Click to download |
-7.06 | 1XAK | 30% | Immunoglobulin-like beta-sandwich | Accessory protein X4 (ORF8, ORF7a) | Accessory protein X4 (ORF8, ORF7a) |
| QHD43416.1 | Surface Glycoprotein | Click to download | Click to download the PDB file |  Click to download |
-5.21 | 5X5B | 76% | NA | NA | NA |