Creating dataset of small nucleotide binding proteins

This page allow users to extract nucleotide-binding proteins from PDB. In this module we used LPC (Ligand Protein Contact) software for creating dataset. For more information click help

Select the type of nucleotide (e.g. ATP)	ATP    ADP    AMP    GTP    GDP    GMP    CTP    CDP    CMP    UTP    UMP    UDP    TTP    TDP    TMP
Ligand interacting amino acid.	ALL ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
Distance (A) between atoms of the ligand and the residue.	From To
Contact surface area between the ligand and the residue.	From To

Type of bond between the ligand and the interacting residue.

ALL    HP    Arom    Phob    DC