Datasets compiled from PDB (31st March 2018)
This page provides datasets compiled from release of PDB (31st March 2018).These datasets were generated using commonly used protocols like non-redundant chains, structures solved at high resolution. Compilation of more datasets in progress. For more information click help.
Types of Datasets | Description of Dataset | NR chains | No. of residues | Download |
---|---|---|---|---|
Secondary structure (assign using DSSP database, chains using PDB select) | Eight state (H,B,E,G,I,T,S,C) Three state [H=(G,H,I); E=(B,E); C=(T,S)] Three state [H=H; E=E; C=(G,I,B,T,S)] | 17608 17608 17608 | DSSP8 DSSP3_1 DSSP3_2 Data Description | |
Irregular Secondary structure Mainly Tight Turns (Promotif used for assignment) |
Beta-Turns I Beta-Turns I' Beta-Turns II Beta-Turns II' Beta-Turns IV Beta-Turns VIa1 Beta-Turns VIa2 Beta-Turns VIb Beta-Turns VIII | 16195 7070 12429 5393 16183 1397 406 2350 11821 | 4406658 2275954 3662852 1787241 4404519 492900 152431 769642 3608645 | BTI16195 BTI'7070 BTII12429 BTII'5393 BTIV16183 BTVIa1_1397 BTVIa2_406 BTVIb2350 BTVIII11821 Data Description |
Gamma-turn-C Gamma-turn-I | 2889 12720 | 1101032 3812599 | GT2889 GT12720 Data Description |
|
Buldge-B Buldge-C Buldge-G Bulge-S Buldge-W | 524 9214 6931 1304 1752 | 193407 2677278 2079636 460423 621075 | BLGB524 BLGC9214 BLGG6931 BLGS1304 BLGW1752 |
|
Hairpin | 12984 | 3606713 | HPIN12984 | |
Psiloop | 2460 | 845957 | PLOOP2460 | |
DNA/RNA interactingresidues | DNA RNA | 560 415 | 168746 117841 | DNA560 RNA415 |
DNA/RNA interacting proteins | DNA RNA | 560 415 | DNA560 RNA415 | |
Nucleotide interacting residuess | ATP ADP GTP GDP NAD FAD FMN UDP | 313 353 83 120 140 172 117 68 | 127493 152419 40442 41412 53276 73733 33514 25064 | ATP313 ADP353 GTP83 GDP120 NAD140 FAD172 FMN117 UDP68 |
Nucleotide interacting Proteins | ATP ADP GTP GDP NAD FAD FMN UDP | 313 353 83 120 140 172 117 68 | ATP313 ADP353 GTP83 GDP120 NAD140 FAD172 FMN117 UDP68 | |
Ligand binding residues | Sulphate Phosphate NAG HEM BME EDO PLP | 3312 1299 727 176 191 1507 65 | 954518 401977 267137 48737 52910 438555 26754 | SO4_3312 PO4_1299 NAG727 HEM176 BME191 EDO1507 PLP65 |
Ligand binding proteins | Sulphate Phosphate NAG HEM BME EDO PLP | 3312 1299 727 176 191 1507 65 | SO4_3312 PO4_1299 NAG727 HEM176 BME191 EDO1507 PLP65 | |
Metal interacting residues | Fe Mg Ca Mn Zn Co Ni | 215 1908 1402 521 1660 201 355 | 69779 655860 468225 179324 487759 56079 95902 | Fe215 MG1908 CA1402 MN521 ZN1660 CO201 NI355 |
Metal interacting proteins | Fe Mg Ca Mn Zn Co Ni | 215 1908 1402 521 1660 201 355 | Fe215 MG1908 CA1402 MN521 ZN1660 CO201 NI355 |