Datasets compiled from PDB (31st March 2018)

This page provides datasets compiled from release of PDB (31st March 2018).These datasets were generated using commonly used protocols like non-redundant chains, structures solved at high resolution. Compilation of more datasets in progress. For more information click help.

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Types of Datasets	Description of Dataset	NR chains	No. of residues	Download
Secondary structure (assign using DSSP database, chains using PDB select)	Eight state (H,B,E,G,I,T,S,C) Three state [H=(G,H,I); E=(B,E); C=(T,S)] Three state [H=H; E=E; C=(G,I,B,T,S)]	17608 17608 17608		DSSP8 DSSP3_1 DSSP3_2 Data Description
Irregular Secondary structure Mainly Tight Turns (Promotif used for assignment)	Beta-Turns I Beta-Turns I' Beta-Turns II Beta-Turns II' Beta-Turns IV Beta-Turns VIa1 Beta-Turns VIa2 Beta-Turns VIb Beta-Turns VIII	16195 7070 12429 5393 16183 1397 406 2350 11821	4406658 2275954 3662852 1787241 4404519 492900 152431 769642 3608645	BTI16195 BTI'7070 BTII12429 BTII'5393 BTIV16183 BTVIa1_1397 BTVIa2_406 BTVIb2350 BTVIII11821 Data Description
	Gamma-turn-C Gamma-turn-I	2889 12720	1101032 3812599	GT2889 GT12720 Data Description
	Buldge-B Buldge-C Buldge-G Bulge-S Buldge-W	524 9214 6931 1304 1752	193407 2677278 2079636 460423 621075	BLGB524 BLGC9214 BLGG6931 BLGS1304 BLGW1752
	Hairpin	12984	3606713	HPIN12984
	Psiloop	2460	845957	PLOOP2460
DNA/RNA interactingresidues	DNA RNA	560 415	168746 117841	DNA560 RNA415
DNA/RNA interacting proteins	DNA RNA	560 415		DNA560 RNA415
Nucleotide interacting residuess	ATP ADP GTP GDP NAD FAD FMN UDP	313 353 83 120 140 172 117 68	127493 152419 40442 41412 53276 73733 33514 25064	ATP313 ADP353 GTP83 GDP120 NAD140 FAD172 FMN117 UDP68
Nucleotide interacting Proteins	ATP ADP GTP GDP NAD FAD FMN UDP	313 353 83 120 140 172 117 68		ATP313 ADP353 GTP83 GDP120 NAD140 FAD172 FMN117 UDP68
Ligand binding residues	Sulphate Phosphate NAG HEM BME EDO PLP	3312 1299 727 176 191 1507 65	954518 401977 267137 48737 52910 438555 26754	SO4_3312 PO4_1299 NAG727 HEM176 BME191 EDO1507 PLP65
Ligand binding proteins	Sulphate Phosphate NAG HEM BME EDO PLP	3312 1299 727 176 191 1507 65		SO4_3312 PO4_1299 NAG727 HEM176 BME191 EDO1507 PLP65
Metal interacting residues	Fe Mg Ca Mn Zn Co Ni	215 1908 1402 521 1660 201 355	69779 655860 468225 179324 487759 56079 95902	Fe215 MG1908 CA1402 MN521 ZN1660 CO201 NI355
Metal interacting proteins	Fe Mg Ca Mn Zn Co Ni	215 1908 1402 521 1660 201 355		Fe215 MG1908 CA1402 MN521 ZN1660 CO201 NI355

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