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Home
Compilation of Datasets
- - Published Literature
- - Compiled from PDB
- - Online Submission
Creation of Datasets
- - Proteins/Chain
- - General Filters
- - Combination of Sets
- - Extract Sequences
- - Non-redundant Data
- - Annotation of Residues
Web Services
- - Analysis of PDB_ID
- - BLAST search
- - Structural Annotation
- - Search in PDB
- - Genrate Patterns
- - Download Information
Important Links
- - Standalone Software
- - Web Servers
- - DataBases
- - ccPDB 2.0 Statistics
General
- - Acknowledgement
- - Help
- - Team
- - Contact
MAP PDB chain for creating Secondary Strcuture dataset
This page allows to assigning function of residues in a PDB chain. User need to upload file containing list of PDB files.
Upload a file having PDB chain ID list:
Example file:
pdbid-list.txt
Please Choose the Secondary Structure Type
Type 1 contains Eight type
Type 2 contains Three type
Type 3 contains Three type
* Helix Nature
* Beta extended strand Nature
* 3-helix (3/10 helix)
* 5 helix (pi helix)
* Hydrogen bonded turn
* Isolated beta-bridge
* Bend
* Coil
* Helix type (includes Helix Nature, 3-helix (3/10 helix) and 5 helix (pi helix)
* Beta strand (includes Beta extended strand Nature and Isolated beta-bridge)
* Coil includes (includes Hydrogen bonded turn, Bend and Coil)
* Helix type (includes Helix Nature)
* Beta strand (includes Beta extended strand Nature)
* Coil includes (includes 3-helix (3/10 helix), 5 helix (pi helix), Isolated beta-bridge, Hydrogen bonded turn, Bend and Coil)
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