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Assigning nucleotides interacting residues
This page is designed for assigning nucleotide interacting residue in PDB chains. For more information click here
help
Upload a file containg PDB ID list:
Example file:
pdbid_list
Select the type of nucleotide (e.g. ATP)
ATP
GTP
ADP
GDP
AMP
GMP
UMP
CMP
UDP
CDP
TTP
UTP
CTP
GMP
Select interacting amino acid (by default ALL is selected for all amino acids)
ALL
ALA
ARG
ASN
ASP
CYS
GLN
GLU
GLY
HIS
ILE
LEU
LYS
MET
PHE
PRO
SER
THR
TRP
TYR
VAL
Please select the nearest distance (A) between atoms of the Nucleotides and the residue.
TO
Please select the contact surface area between the Nucleotides and the residue.
TO
Please select the type of bond between the Nucleotides and the interacting residue.
ALL
HB
Arom
Phob
DC
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