| Resource/Database | Brief Description |
|---|
| Liverome | Liverome is a curated database of liver cancer-related gene signatures. The gene signatures were obtained mostly from published microarray and proteomic studies. |
| cBioPortal | Provides visualization, analysis and download of large-scale cancer genomics data sets. |
| CancerLSP | CancerLSP is a web-bench Liver cancer stage prediction Server. It is developed to predict whether liver tissue samples is cancerous or normal and it also predict whether sample belong to Early (Stage-I) and Late stage of LIHC patients using gene expression data (derived from RNA-seq experiments in the form of RNA-Seq FPKM values) and Methylation Data. |
| HCCPred | HCCpred is a web-bench for the prediction of tumorous and non-tumorous Hepatocellular Carcinoma (HCC) patients. It has 3 major prediction modules based on the robust biomarkers such as 3-Genes HCC Biomarker, 4-Genes HCC Biomarker, 5-Genes HCC Biomarker. |
| BioXpress | BioXpress is a gene/miRNA expression and disease association database with expression levels mapped to genes or miRNAs. The current version of BioXpress contains only genes associated with cancer. |
| OncoMX | A cancer biomarker resource leveraging published literature and genomics data. |
| LiverCancerMarkerRIF | A liver cancer biomarker interactive curation system combining text mining and expert annotations. |
| NCTRlcdb | A National Center for Toxicological Research liver cancer database (NCTRlcdb) containing 999 chemicals has been developed based on liver-specific carcinogenicity. |
| GDC Data Portal | The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis. |
| GEO | GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Tools are provided to help users query and download experiments and curated gene expression profiles. |
| ICGC | International Cancer Genome Consortium |
| COSMIC | A catalogue of somatic mutation in cancer,world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer. |
| UCSC Xena | Analyze and visualize genomics data sets. |
| GDSC | Identifying molecular features of cancers that predict response to anti-cancer drugs. |
| DisGeNET | A larget repository of genes and variants associated to human diseases. |
| CTD:Comparative Toxicogenomics Database | CTD is a robust, publicly available database that aims to advance understanding about how environmental exposures affect human health. It provides manually curated information about chemical-gene/protein interactions, chemical-disease and gene-disease relationships. |
| canSAR | Multidisciplinary information; drug discovery. |
| miRBase | A databse of miRNA. |
| bioDBnet:db2db | db2db allows for conversions of identifiers from one database to other database identifiers or annotations. |
| CTLPScanner | A web server for chromothripsis-like pattern detection. |