Description of Datasets in CancerLivER
This page shows brief information about datasets selected by user. For more information see HELP page.
The total number of entries retrieved from this search are 45Please click on Biomarker_ID to view detailed information.
| CancerLivER ID | Profiling Technique | GEO Series ID | Values | Packge | Platform | No# Samples | Cancer Type | No of Genes | Pubmed ID | Download |
|---|---|---|---|---|---|---|---|---|---|---|
| 1001 | Affymetrix Array | GSE102079 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 257 | Hepatocellular carcinoma | 22048 | 29454748 |  |
| 1002 | Affymetrix Array | GSE107170 | RMA (Robust Multi Array) | Oligo | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 307 | Hepatocellular carcinoma | 22048 | 29858376 | |
| 1003 | Affymetrix Array | GSE11819 | RMA (Robust Multi Array) | Oligo | GPL96 [HG-U133A] Affymetrix Human Genome U133A Array | 16 | Hepatocellular adenoma | 13768 | 19020503 | |
| 1004 | Affymetrix Array | GSE14323 | RMA (Robust Multi Array) | Oligo | GPL96[HG-U133A] Affymetrix Human Genome U133A ArrayGPL571[HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array | 115 | Hepatocellular carcinoma and Hepatitis C cirrhosis | 13768 | 19098997 | |
| 1005 | Affymetrix Array | GSE15765 | RMA (Robust Multi Array) | Oligo | GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array | 90 | Hepatocellular carcinoma and Cholangiocarcinoma | 13768 | 20395200 18381945 | |
| 1006 | Affymetrix Array | GSE17548 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 37 | Cirrhosis | 13768 | 23691139 | |
| 1007 | Affymetrix Array | GSE17967 | RMA (Robust Multi Array) | Oligo | GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array | 63 | Hepatocellular carcinoma and Hepatitis C cirrhosis | 13768 | 19861515 | |
| 1008 | Affymetrix Array | GSE19665 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 20 | Hepatocellular carcinoma | 22048 | 20345479 | |
| 1009 | Affymetrix Array | GSE22405 | RMA (Robust Multi Array) | Oligo | GPL10553 Affymetrix GeneChip Human Genome HG-U133A Custom CDF [ncilpg_U133Agb] | 48 | Hepatocellular carcinoma | 13768 | NA | |
| 1010 | Affymetrix Array | GSE25097 | RMA (Robust Multi Array) | Oligo | GPL10687 Rosetta/Merck Human RSTA Affymetrix 1.0 microarray, Custom CDF | 557 | Hepatocellular carcinoma | 18076 | 21955977 21750698 22634754 | |
| 1011 | Affymetrix Array | GSE29721 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 20 | Hepatocellular carcinoma | 22048 | 21747116 | |
| 1012 | Affymetrix Array | GSE32384 | RMA (Robust Multi Array) | Oligo | GPL6244:[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript | 24 | Hepatocellular carcinoma | 21589 | NA | |
| 1013 | Affymetrix Array | GSE32879 | RMA (Robust Multi Array) | Oligo | GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array | 37 | Hepatocellular carcinoma, Cholangiocarcinoma and Hepatic Adenoma | 21589 | 22707408 | |
| 1014 | Affymetrix Array | GSE33006 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 6 | Hepatocellular carcinoma | 22048 | 22923518 | |
| 1015 | Affymetrix Array | GSE40873 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 49 | Hepatocellular carcinoma | 22048 | 23543312 | |
| 1016 | Affymetrix Array | GSE41804 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 40 | Hepatocellular carcinoma | 22048 | 23426277 | |
| 1017 | Affymetrix Array | GSE45050 | RMA (Robust Multi Array) | Oligo | GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array | 16 | Hepatocellular carcinoma and Cirrhosis | 21589 | 24497316 | |
| 1018 | Affymetrix Array | GSE45267 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 87 | Hepatocellular carcinoma | 22048 | 30411085 | |
| 1019 | Affymetrix Array | GSE45434 | RMA (Robust Multi Array) | Oligo | GPL570 :[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 16 | Hepatocellular carcinoma | 22048 | NA | |
| 1020 | Affymetrix Array | GSE45435 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 31 | Hepatocellular carcinoma | 22048 | NA | |
| 1021 | Affymetrix Array | GSE51401 | RMA (Robust Multi Array) | Oligo | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 64 | Hepatocellular carcinoma | 22048 | NA | |
| 1022 | Affymetrix Array | GSE62232 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 91 | Hepatocellular carcinoma | 22048 | 25822088 | |
| 1023 | Affymetrix Array | GSE63067 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 18 | Hepatocellular carcinoma, Steatosis and Steatohepatitis | 22048 | 25993042 | |
| 1024 | Affymetrix Array | GSE64041 | RMA (Robust Multi Array) | Oligo | GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array | 125 | Hepatocellular carcinoma | 21589 | 27499918 | |
| 1025 | Affymetrix Array | GSE69715 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 103 | Hepatocellular carcinoma | 22048 | 29538454 | |
| 1026 | Affymetrix Array | GSE72981 | RMA (Robust Multi Array) | Oligo | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 30 | Hepatocellular carcinoma | 22048 | 26520397 | |
| 1027 | Affymetrix Array | GSE7473 | RMA (Robust Multi Array) | Oligo | GPL96:[HG-U133A] Affymetrix Human Genome U133A Array ; GPL3282:11K_VJF-ARRAY | 41 | Hepatocellular carcinoma | 13768 | 17379603 | |
| 1028 | Affymetrix Array | GSE84402 | RMA (Robust Multi Array) | Oligo | GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 28 | Hepatocellular carcinoma | 22048 | 28810927 | |
| 1029 | Affymetrix Array | GSE98383 | RMA (Robust Multi Array) | Oligo | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 74 | Hepatocellular carcinoma and Cirrhosis | 22048 | 29858376 | |
| 1030 | Affymetrix Array | GSE9843 | RMA (Robust Multi Array) | Oligo | GPL570[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | 91 | Hepatocellular carcinoma | 22048 | 18701503 21324318 21320499 | |
| 1034 | Illumina Array | GSE27635 | Raw value with background correction | Limma | GPL5858DASL Human Cancer Panel by Gene | 96 | Hepatocellular carcinoma | 1506 | 21665914 | |
| 1035 | Illumina Array | GSE28248 | Raw value with background correction | Limma | GPL5858 DASL Human Cancer Panel by Gene | 80 | Hepatocellular carcinoma | 502 | 21712445 | |
| 1057 | Agilent-1-color Array | GSE55191 | A-values with bakground correction | Limma | GPL15314: Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version) | 6 | Hepatocellular carcinoma | NA | 26054679 | |
| 1067 | Agilent-2-color Array | GSE94508 | A-values with bakground correction | Limma | GPL19978 Agilent-069978 Arraystar Human CircRNA microarray V1 | 10 | Hepatocellular carcinoma | 6327 | NA | |
| 1068 | Other array | GSE10140 | A-values with bakground correction | Limma | GPL5474 Human 6k Transcriptionally Informative Gene Panel for DASL | 82 | Hepatocellular carcinoma | 6144 | 21320499 18923165 | |
| 1069 | Other array | GSE10141 | A-values with bakground correction | Limma | GPL5474 Human 6k Transcriptionally Informative Gene Panel for DASL | 80 | Hepatocellular carcinoma | 6144 | 18923165 | |
| 1070 | Other array | GSE54238 | A-values with bakground correction | Limma | GPL16955 :Arraystar human lncRNA microarray V1-100309 | 56 | Hepatocellular carcinoma | 13084 | 25964079 27449498 | |
| 1071 | Other array | GSE70297 | A-values with bakground correction | Limma | GPL19589 NanoString Prognostic Liver Signature panel - Slim | 263 | Hepatocellular carcinoma | 36 | 27960085 | |
| 1076 | High-throughput | GSE55758 | RPKM | NA | GPL9052 Illumina Genome Analyzer (Homo sapiens) | 16 | Hepatocellular carcinoma | 18103 | 26300991 | |
| 1078 | High-throughput | GSE63863 | FPKM | NA | GPL11154 Illumina HiSeq 2000 (Homo sapiens) | 24 | Hepatocellular carcinoma | 23284 | 25683523 | |
| 1080 | High-throughput | GSE69164 | FPKM | NA | GPL11154 Illumina HiSeq 2000 (Homo sapiens) | 33 | Hepatocellular carcinoma | 23284 | 26271415 | |
| 1083 | High-throughput | GSE77509 | normalized_read_count | NA | GPL16791 Illumina HiSeq 2500 (Homo sapiens) | 60 | Hepatocellular carcinoma | 22827 | 28194035 | |
| 1085 | High-throughput | GSE94660 | RPKM | NA | GPL16791 Illumina HiSeq 2500 (Homo sapiens) | 42 | Hepatocellular carcinoma | 26760 | 29212479 | |
| 1086 | High-throughput | GSE97214 | FPKM | NA | GPL16791 Illumina HiSeq 2500 (Homo sapiens) | 18 | Hepatocellular carcinoma | 25264 | 28489570 | |
| 1087 | High-throughput | TCGA | FPKM | NA | HT-seq (RNA-seq) | 424 | Hepatocellular carcinoma | 19834 | 28622513 | |