Predicting Cancer Stage from Genomics Data

This tool allows the users to submit RSEM values of genes and predict if the cancer patient has Early Stage cancer or Late Stage cancer using gene expression data of 10 genes, resulting from threshold based analysis of RNA-seq data of KIRC from TCGA data. This method requires RSEM values of 10 genes in each patient to predict whether it’s in early or late stage of cancer. The first column is gene and in second column expression of corresponding gene in a particular number of patients. This tool allows prediction of single patient only. You can refer to batch mode, if you want to predict for more than one patient. For more information please click Help.

Submit csv file in which each number represents the RSEM value derived from genomics value of each pateint derived from RNAseq data of the cancer patient:



   Example csv file   

Choose SVM threshold:                  SVM threshold is required for prediction. Moving the threshold value in either direction (positive or negative) will lead to increase in probability of correct prediction in that direction