Download Data

This page provides the data to users used in the developement of CancerCSP. The Level 3 RNAseq expression data for 523 ccRCC patients with KIRC (Kidney Renal Clear Cell Carcinoma) was obtained from the TCGA data portal with their clinical information in the form of Biospecimen Core Resource (BCR) IDs for patients from the Biotab utility. The dataset provides gene expression values in the form of RSEM for 20,531 genes in tumor samples of the patients. The obtained data consists of raw counts and RSEM values. In our work, RSEM values were used as quantification values, and only tumor samples with matched normal or unmatched normal were taken into consideration. We defined stage I and stage II patients as early stage patients and stage III and stage IV patients as late stage patients. In this study, 80% samples (419 patients) were used for training and testing called training dataset. Remaining 20% samples (104 patients) were used for external validation called as independent or external validation dataset. The log-normalised z-score is for 19165 genes as rest of genes had variation less than 0.025 so they for not taken for further analysis.

Log2 RSEM Data

To download complete early stage (positive) data training filecomplete Log normalised Positive Training Data

To download complete late stage (negative) data training file complete Log normalised Negative Training Data

To download complete early stage (positive) validation file Complete Log normalised Positive Validation Data

To download complete negative vaildation file Complete Log normalised Negative Validation Data

Log2Normalised Z-score Data

To download complete early stage (positive) data training filecomplete Log normalised z-score Positive Training Data

To download complete late stage (negative) data training file complete Log normalised z-score Negative Training Data

To download complete early stage (positive) validation file Complete Log normalised z-score Positive Validation Data

To download complete late stage (negative) vaildation file Complete Log normalised z-score Negative Validation Data