AptBacterialDB
AptBacterialDB

AptBacterialDB BLASTN Search

Run a BLASTN search of your query sequence against the AptBacterialDB nucleotide database (1908 sequences).

How to use BLASTN Search

  • Enter your nucleotide sequence in plain or FASTA format.
  • Select an appropriate BLAST task (e.g., blastn-short for short oligos).
  • Adjust parameters like word size, E-value, and max hits if needed.
  • Click Run BLASTN to find similar sequences in AptBacterialDB.
  • use parameter guide below for tips on optimizing your search.
Parameter Guide
  • Word size: Smaller values increase sensitivity.
  • E-value: Lower values = more significant matches.
  • Max hits: Limits number of results.
Example: ATGTTGGCATCCTCACTTG

Note: Results include alignment score, identity %, E-value, and matched database entries.