AntiTbPdb

Welcome to Help Page

This page provides help to the users of AntiTbPdb database on how to efficiently use this repository of antitubercular peptide. For each module which is implemented in AntiTbPdb, here we provide the figures and description on how to use that module. Four general modules are provided with the respective.

Search Module

Simple search This module displays the simple search page of AntiTbPdb. Clicking on the required field will allow the user to browse the specific information in the database. The "select fields to be searched" section provides options for various keywords through which search can be made in AntiTbPdb. User can select fields to be displayed from the section "fields to be displayed". User can click on each antitb ID to get all the details about a entry. User can also click on each peptide to know information about that peptide.

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Advanced Search This page provides the advanced search facility in AntiTbPdb. User can browse the page by selecting two or more than two fileds.

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Browse page

Browse by peptide Type This page provides the user to get the list of total number of peptides according to a particular peptide type.

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Browse by Modification This page provides the user to get the list of all the modifications of peptide in the database.

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Browse by Species This page provides the user to get the list of total number of Peptides present in database according to each species type.

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Browse by Moonlight This page provides the user to get the list of total number of peptides which have efficacy against more than one species of Mycobacterium.

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Composition Module

Amino acid frequency This page is designed for searching peptides with desired amino acid frequency.

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Secondary structure composition This page assists the user to search anti-tubercular peptides based on their secondary structure composition.

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Tools

BLAST Search Blast-Search page assists users in performing BLAST search against the peptides present in AntiTbPdb. User can submit their peptide with desired BLAST options for performing similarity, server will returns the BLAST output containing list of peptides similar to the query peptide.

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Mapping Peptide Mapping module offers the user to run a sub-search and super-search. In sub-search a given peptide is mapped against all peptides of AntiTbPdb Database. While super-search returns similar peptides of our database against protein sequence given as query.