Welcome to the help page of AntiBP3

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This webserver has been designed to facilitate research on Antibacterial peptides and aid in drug design and development. The primary goal of this server is to predict Antibacterial peptides.

This page provides a brief overview on different modules of the server. Following are major modules in this server:

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Predict Module

This module allows the user to predict the antibacterial peptides against three bacterial groups i.e., Gram-positive, Gram-negative and Gram-variable. User may submit a single peptide or multiple peptides in fasta format. User can select the desired model by checking the box provided in the main page.

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Design Module

This module allows users to generate mutants of the query protein and each mutant is checked for its Antibacterial activity according to the model selected by the user.

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Protein Scan Module

This module allows users to generate patterns of the query protein of fixed window length and each pattern is checked for its Antibacterial activity according to the model selected by the user.

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Blast Scan Module

This module allows users to search the query protein sequence against the database of known Antibacterial peptides using similarity-based search method, i.e. BLAST.

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Motif Scan Module

This module allows users to scan or map Antibacterial motifs which may be present in the query sequence, using MERCI program.