Prediction of Beta turns and Types

This form allows user to submit their protein sequence for predicting beta-turns and types of beta-turn in their query protein. User need to submit their protein sequence in FASTA format. There are three non-redundant PDB database againt which BLAST can be performed: 40%, 70% and 100%. Click here.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%
   
 Display the result as  Beta Turn  Types of Beta Turn
   
        

Gamma Turn Annotation

This form allows user to submit their protein sequence for predicting gamma-turns and types of gamma-turn in their query protein. User need to submit their protein sequence in FASTA format. There are three non-redundant PDB database againt which BLAST can be performed: 40%, 70% and 100%. Click here.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%
   
 Display the result as  Gamma Turn  Types of Gamma Turn
   
        

Beta Bulge Annotation

This module helps in Beta Buldge annotation of query protein. User can give a single sequence and select various blast parameters. There are three non-redundant PDB database againt which BLAST can be performed: 40%, 70% and 100%. User can perform annotation using either consensus Beta Buldge or Beta Buldge types. For more information about Beta Buldge Click here

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%
   
 Display the result as  Beta Bulge  Types of Beta Bulge
   
        

Beta hairpin Annotation

This module helps in Beta hairpin annotation of query protein. User can give a single sequence and select various blast parameters. There are three non redundant PDB database againt which blast can be performed: 40%, 70% and 100%. For more information about Beta hairpin Click here.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%    
       

Psiloop Annotation

This module helps in Psiloop annotation of query protein. User can give a single sequence and select various blast parameters. There are three non-redundant PDB database againt which BLAST can be performed: 40%, 70% and 100%. For more information about Psiloop Click here.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation: Expect Value (e-value):        Weight Matrix:         


 Select level of redundancy  40%  70%  100%