DNA Interacting Amino acids Annotation

This module helps in DNA interacting residue level annotation of query protein. User can give a single sequence and select various blast parameters. There are three non-redundant PDB database againt which BLAST can be performed: 40%, 70% and 100%. User can select the interacting amino acid/nucleotide and the interaction distance between amino acid and dna.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%
 


        

RNA Interacting Amino acids Annotation

This module helps in RNA interacting residue annotation of query protein. User can give a single sequence and select various blast parameters. There are three non-redundant PDB database againt which blast can be performed: 40%, 70% and 100%. User can select the interacting amino acid/nucleotide and the interaction distance between amino acid and RNA.

Sequence Submission Form

Paste your Protein sequence in FASTA format (single sequence only)

Select number of top BLAST hits for annotation:        Expect Value (e-value):        Weight Matrix:


 Select level of redundancy  40%  70%  100%