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Biomarker Card

This biomarker card gives comprehensive information about each biomarker.
Detailed Information
Biomarker ID1760
PMID29158798
Year2017
BiomarkerPSA concentration+Gleason grade+clinical T stage+ AHNAK2; ANKRD30A; ANKRD36C; APOB; ATP13A5; BAI3; CACNA1A; CACNA1E; CDH23; CNTNAP5; EPB41L3; FAM47C; FAT2; FAT4 ;FBN3; FLG2; FRG1B; HSPG2; KMT2D; KRTAP4-9; LPHN3; MUC16; SACS; MUC4; SALL1; MYH11; SCN5A; MYT1L; SPOP; NOD1; SRCAP; PCDHA12; TP53; PIK3CA; TRPM6; PTEN; USH2A; PTH2; ZNF208; PTPRC; ZNF91;RYR1; MUC2;
Biomarker BasisMutation Based
BiomoleculeMutation
SourceNA
SubjectsHumans
RegulationNA
Odds Ratio/Hazard Ratio/Relative RiskNA
Effect on PathwaysNA
ExperimentProstate Cancer Vs No Prostate Cancer
Type of BiomarkerDiagnostic
Cohort80 patients with tumor and 308 tumor free samples were taken from TCGA cohort for analysus
SenstivityNA
SpecificityNA
AUC0.746
Accuracy71.3%
Level Of SignificanceNA
Method UsedNA
ClinicalNo
RemarksNational Institute for Health and Care Excellence (NICE) features were added to the model, which consist of PSA concentration, Gleason grade, and clinical T Stage. 5 fold cross validation used on data. SVM model created
Clinical Trial NumberNA
Degree Of ValidityNot validated on independent patient dataset
Technical NameNA