S. No. | Name | Description |
| AntiCP | A web server for designing and discovering novel anticancer peptides. |
| ToxinPred | In silico approach for predicting toxicity of peptides and proteins. |
| AntiBP2 | Server for antibacterial peptide prediction. |
| TumorHPD | Server for designing of tumor homing peptides. |
| HLP | A web server for predicting half-life of peptides in intestine like environment. |
| CellPPD | Server for designing of cell penetrating peptides. |
| HemoPI | A server for prediction of hemolytic potency of peptides. |
| AntiAngioPred | A Server for prediction and designing of antiangiogenic peptides. |
| PEPstr | A Server for prediction of tertiary structure of peptides. |
| PEPstrMOD | Structure prediction of peptides containing natural, non-natural and modified residues. |
| PEP-FOLD | A de novo approach for predicting peptide structures from amino acid sequences. |
| PEP2D | A web server for predicting secondary structure of peptides. |
| ProPred | MHC Class-II binding peptide prediction server. |
| MHC2Pred | SVM-based method for prediction of promiscuous MHC Class II binders |
| IL4pred | In silico platform for designing and disovery of interleukin-4 inducing peptides. |
| IFNepitope | A server for predicting and designing interferon-gamma inducing peptides. |
S.No. | Name | Description |
| BIOPEP | BIOPEP database and other programs for processing bioactive peptide sequences |
| Brainpeps | Blood-brain barrier properties of peptides |
| CAMP | Collection of sequences and structures of antimicrobial peptides |
| CPPsite | A curated database of cell penetrating peptides |
| EROP-Moscow | The EROP-Moscow oligopeptide database |
| MilkAMP | A comprehensive database of antimicrobial peptides of dairy origin |
| RAPD | Recombinantly-produced Antimicrobial Peptides Database |
| TumorHoPe | A database of Tumor Homing Peptides |
| Hemolytik | Database of hemolytic peptides |
| SPdb | A signal peptide resource |
| Quorumpeps | Chemical space, microbial origin and functionality of quorum sensing peptides |
| YADAMP | Anti-microbial Database |
| PeptideDB | Bioactive peptide database in Metazoa |
| IEDB | Immune Epitope Database |
| SYFPEITHI | Database for MHC ligands and peptide motifs |
| MHCBN 4.0 | MHC binding and non-binding peptides |
| AntiJen | Quantitative binding data for peptides binding to MHC Ligand, TCR-MHC Complexes, T Cell Epitope, TAP, B Cell Epitope molecules and immunological Protein-Protein interactions |
| Bcipep | Database of B-cell epitopes |
| ACEpepDB | Food derived antihypertensive peptides |
| Human Urine Peptide Database | A database of naturally occurring human urinary peptides and proteins for use in clinical applications |
| PepBank | Peptides based on sequence text mining and public peptide data sources. |
| PhytAMP | database dedicated to antimicrobial plant peptides |
| EPIMHC | A curated database of MHC-binding peptides for customized computational vaccinology. |
| ParaPep | A repository of experimentally validated anti-parasitic peptides |
| CancerPPD | Database of Anticancer peptides and proteins |
| PEPlife | A database of half life of peptides |
| DADP | Database of Anuran Defense Peptides |
| DAMPD | Dragon Antimicrobial Peptide Database |
| APD2 | The Antimicrobial Peptide Database |
| AMPer | A Database and an Automated Discovery Tool for Gene-Coded Antimicrobial Peptides |
| DEFENSINS Knowledgebase | Manually curated database and information source devoted to the defensin family of antimicrobial peptides |
| NeuroPep | A comprehensive resource of Neuropeptides |
| NeuroPedia | Neuropeptide database and spectral library. |
| MPID-T2 | MHC-Peptide Interaction Database-TR version 2 |
| Signal Peptide website | An Information Platform for Signal Sequences and Signal Peptides |
| SwePep | Database designed for endogenous peptides and mass spectrometry |
| AVPdb | Database of experimentally validated antiviral peptides |
| Peptaibol | Peptaibols generally exhibit antimicrobial activity and are referred to as antibiotic peptides |
| PEPTIDOME DB | A comprehensive fact-database for endogenous peptides |
| NORINE | A database of nonribosomal peptides |
| ConoServer | A database for conopeptides which are peptides expressed by carnivorous marine cone snails |
| BaAMPs | Biofilm-active AMPs database: antimicrobial peptides (AMPs) specifically tested against microbial biofilms. |
| BACTIBASE | A data repository of bacteriocin natural antimicrobial peptides |
| LAMP | A database linking antimicrobial peptide. |
| DBAASP | Database of Antimicrobial Activity and Structure of Peptides |
| HIPdb | A Database of Experimentally Validated HIV Inhibiting Peptides |
| HMRBase | A database of hormones and their receptors |
| BactPepDB | a database of predicted peptides from a exhaustive survey of complete prokaryote genomes |