Concept of GDPbio
About GDPbio
Diseases prediction
Personal Drugs
Vaccines
Biomarkers
Diseases and Genes
Cancer
Useful Databases
Diseases Susceptiblity
Diseases Diagnosis
Diseases Management
Diseases Screening
Personal Genomes
Sequencing Projects
Genomic Databases
Problems faced
Personalized Medicines
Wiki Pages
Important Links
Slides (PPT/PDF)
Challenges
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Useful Databases
List of Important Databases
Below is given the list of databases that may play an important role during the development of Disease Prediction related tools, biomarksers development and Personalized medicinnes development, they are key resources during the whole process. The most useful are:
- PharmGKB: Variation in drug response based on human variation
- SuperTarget and Matador
Drug-related information: medical indications, adverse drug effects, drug metabolism and GO terms of the target proteins
- HGVbase: A curated human polymorphisms database
- Human p53, human hprt, rodent lacI and rodent lacZ databases
Mutations at the human p53 and hprt genes; rodent transgenic lacI and lacZ mutations
- IDBD: Infectious Disease Biomarker Database
- KinMutBase: A registry of disease-causing mutations in protein kinase domains
- OMIM - Online Mendelian Inheritance in Man
- The Cell Cycle DB
Genes and proteins involved in human and yeast cell cycle
- TiProD: Human promoter sequences
- TRBase: Tandem repeats in the human genome
- VarySysDB: Various types of human gene polymorphism
- BodyMap: Human and mouse gene expression data
- ASHESdb: Alternatively spliced human genes by exon skipping database
- GDB: the Human Genome Database
- HIB: The HumanInfoBase, a database of putative human gene transcripts
- DART - Drug Adverse Reaction Targets
- Database of Germline p53 Mutations
- dbMHC: Genetic and clinical database of the human MHC
- dbSNP: Database of single nucleotide polymorphisms
- DG-CST: A database of Disease gene conserved sequence tags
- DrugBank: Combined information on drugs and drug targets
- EHCO: Encyclopedia of Hepatocellular Carcinoma genes Online
- Endogenous GPCR List: G protein-coupled receptors; expression in cell lines
- EpoDB - Erythropoiesis Database
Genes expressed during human erythropoiesis
- Evola: Human genes and their vertebrate orthologs
- F-SNP: Functional effects of various human SNPs
- FESD - Functional Element SNPs Database
SNPs located within promoters, UTRs, etc., of human genes
- GenAtlas: Human genes, markers, and phenotypes
- Gene Aging Nexus: Aging-related gene expression data
- GeneAnnot: Revised and improved annotation of Affymetrix human gene probe sets
- GeneCards: Integrated database of human genes, maps, proteins, and diseases
- GeneLoc: Gene Location database, formerly known as Unified database for human genome mapping (UDB)
- GeneNest: Gene indices of human, mouse, zebrafish, Arabidopsis, and Drosophila
- GeneNote: Human genes expression profiles in healthy tissues
- GeneSpeed: Protein domains in the expressed human, mouse, fly and worm genes
- Genetics Home Reference: A general guide on human hereditary diseases
- GenomeTraFaC: Conserved regulatory elements of human and mouse genes
- GEO - Gene Expression Omnibus
Public gene expression repository
- GOLD: Information regarding complete and ongoing genome projects
- GOLD.db - Genomics Of Lipid-associated Disorders
Genes, proteins, and pathways implicated in lipid- associated disorders
- GPCR NaVa database
A database of natural sequence variants within the family of human G Protein-Coupled Receptors
- GPCRDB: G protein-coupled receptors
- gpDB - G-protein database
G-proteins and their interaction with GPCRs
- H-DBAS: Human database of alternative splicing
- H-InvDB: Full-length human cDNA clones
- HaemB: Factor IX gene mutations, insertions and deletions
- HAGR - Human Ageing Genomic Resources
Genes related to ageing in humans and model organisms
- HapMap Project: SNP Consortium data
- HbVar: Human hemoglobin variants and thalassemias
- HCAD - Human Chromosome Aberration Database
Chromosomal breakpoints and affected genes
- HGNC Database: Human gene nomenclature database: Approved symbols for all human genes
- Database of Genomic Variants
Human genomic variants: frequency, segmental duplications and genome assembly gaps
- dbERGEII: Database of experimental results on gene expression
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