Welcome to siRNA prediction page
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These are predicted siRNA using Orf3a protein of Coronavirus. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| [1] AACAACAACAGCAAGUUGC | 11 | GCAACUUGCUGUUGUUGUU | 0.978608 | 1.079911 |
| [2] UUCAGUAUAACCACCAAUC | 6 | GAUUGGUGGUUAUACUGAA | 0.693099 | 1.017956 |
| [3] UUCAGUAUAACCACCAAUC | 4 | GAUUGGUGGUUAUACUGAA | 0.71775 | 1.0174 |
| [4] AACACCAGUGUCUGUACUC | 10 | GAGUACAGACACUGGUGUU | 0.717922 | 0.992637 |
| [5] AAUUGAGUUGAGUACAGCU | 4 | AGCUGUACUCAACUCAAUU | 0.653317 | 0.976176 |
|| CoronaVir || India_MOHFW || WHO Advisory || Status || Diagnostics Tests || Genome || Patient Mangagement || Drug Design || Raghava's Group ||
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