PCPpred: Cyclic Peptide Permeability Prediction

Design a custom peptides

In this design section, you can design your custom peptide (Linear/Cyclic) using the monomers mentions in the table. The peptide sequence generated is in MAP (Modification and Annotation in proteins) format which is a extended FASTA format proposed by our group to write complex proteins/peptides in a human readble notation. User may also choose to convert the MAP notation into SMILES or HELM notation..

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Select monomer from table :

#	MAP Denotion	Compound Name	Symbol

SMILES : CN[C@@H](C)C=O

Chemical structure diagram of bU-dAla molecule with atoms colored blue, red, and black

Sequence:

Sequence Type:

Position 1

Position 2

Peptide Sequence Output (MAP format without headers):

Click to Know about MAP format

You can also convert the Output MAP format peptide sequence into SMILES or HELM format in section below:

MAP to SMILES

SMILE Sequence Output:

MAP to HELM

Peptide ID:

*Required for HELM format

HELM Sequence Output: