lncInfo: A comprehensive resource on lncRNA

Existing tools performing subcellular localization prediction

On this page, we have enlisted tools developed to predict subcellular localization. We have attempted to provide a brief overview of the existing tools. Following information is provided on this page - Year of development, Features used, Oversampling technique, Algorithm and the number of subcellular locations covered by the tool. Click on the headers to sort them accordingly.

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Name of method	Year	Features used	Oversampling technique	Algorithm	No. of subcellular locations	Pubmed link
DeepLncLoc	2022	k-mer, Subsequence embedding	-	TextCNN	5 (Nucleus, Ribosome, Cytoplasm, Exosome, Cytosol)	34498677
DeepLncRNA	2018	k-mer, Genome loci, RNA binding motifs	-	Neural Networks	2 (Nucleus/Cytosol)	30401954
GM-lncLoc	2023	k-mer	SMOTE	Graph convolutional networks based on MAML	4/5 (Nucleus, Ribosome, Cytoplasm, Exosome)/Cytosol	36709266
GraphLncLoc	2023	de Bruijn graphs	-	Graph convolutional networks	4 (Nucleus, Ribosome, Cytoplasm, Exosome)	36545797
iLoc-lncRNA	2018	PseKNC	-	SVM	4 (Nucleus, Ribosome, Cytoplasm, Exosome)	29931187
KD-KLNMF	2020	k-mer, Dinucleotide-based spatial autocorrelation	-	SVM	4 (Nucleus, Ribosome, Cytoplasm, Exosome)	33080214
LncLocation	2020	k-mer, physicochemical properties	-	SVM	4 (Nucleus, Ribosome, Cytoplasm, Exosome)	33019721
lncLocator	2018	k-mer	SOS	Random forest , SVM, Autoencoder	5 (Nucleus, Ribosome, Cytoplasm, Exosome, Cytosol)	29462250
lncLocator 2.0	2021	Word embedded sequences converted into fixed length vectors	-	GloVe + CNN + BiLSTM + MLP	2 (Nucleus/Cytoplasm)	33630066
lncLocPred	2020	k-mer, PseDNC	-	Logistic regression	4 (Nucleus, Ribosome, Cytoplasm, Exosome)	10.1109/ACCESS.2020.3007317

Showing 1 to 10 of 12 entries