lncInfo: A comprehensive resource on lncRNA

Existing databases dedicated to lncRNA annotation and subcellular localization

On this page, we have enlisted databases/repositories that contain information regarding lncRNA functional annotation and subcellular localization. These databases provide important aspects of lncRNA biology and will be an asset for researchers. The first column represents the Name of the database, and the rest of the columns represents the Brief description, Website link, PubMed ID, and Year of development. Click on the headers to sort them accordingly.

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Name	Brief Description	Website link	Pubmed ID	Year
CANTATAdb	A database of long non-coding RNAs in plants	http://cantata.amu.edu.pl/	30945201	2019
ENCODE	A database of functional annotation based on sequencing data	https://www.encodeproject.org/	31713622	2018
FANTOM Cat	A database for functional annotation of the mammalian genome	https://fantom.gsc.riken.jp/cat/	28241135	2017
GENCODE	A database that provides comprehensive gene annotation for the human and mouse genome	https://www.gencodegenes.org/	30357393	2022
GEO	Gene Expression Omnibus (GEO) is a public repository for storing and sharing gene expression data	http://www.ncbi.nlm.nih.gov/geo/	23193258	2013
GTEx	Genotype-Tissue Expression database	https://gtexportal.org/home/	28241135	2020
Lnc2Cancer v3.0	A resource for experimentally supported lncRNA/circRNA cancer associations	http://bio-bigdata.hrbmu.edu.cn/lnc2cancer/	33219685	2020
LncAtlas	A quantitative resource for RNA subcellular localization	https://lncatlas.crg.eu/	28386015	2017
LNCbook 2.0	Integrated database of human long non-coding RNAs with multi-omics annotations	https://ngdc.cncb.ac.cn/lncbook/	36330950	2023
lncExpDB	A comprehensive database of experimentally supported associations between lncRNA or circRNA and human cancer	https://ngdc.cncb.ac.cn/lncexpdb/	33045751	2021

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