On this page, we have enlisted databases/repositories that contain information regarding lncRNA functional annotation and subcellular localization. These databases provide important aspects of lncRNA biology and will be an asset for researchers. The first column represents the Name of the database, and the rest of the columns represents the Brief description, Website link, PubMed ID, and Year of development. Click on the headers to sort them accordingly.
| Name | Brief Description | Website link | Pubmed ID | Year |
|---|---|---|---|---|
| LncAtlas | A quantitative resource for RNA subcellular localization | https://lncatlas.crg.eu/ | 28386015 | 2017 |
| FANTOM Cat | A database for functional annotation of the mammalian genome | https://fantom.gsc.riken.jp/cat/ | 28241135 | 2017 |
| ENCODE | A database of functional annotation based on sequencing data | https://www.encodeproject.org/ | 31713622 | 2018 |
| LncSLdb | A resource for RNA subcellular localization curated from literature | http://bioinformatics.xidian.edu.cn/lncSLdb | 30219837 | 2018 |
| LNCipedia | A database for lncRNA sequence and annotation | https://lncipedia.org/ | 30371849 | 2018 |
| CANTATAdb | A database of long non-coding RNAs in plants | http://cantata.amu.edu.pl/ | 30945201 | 2019 |
| LncRNADisease2 | A database of long non-coding RNA associated with diseases | http://www.rnanut.net/lncrnadisease/ | 30285109 | 2019 |
| GTEx | Genotype-Tissue Expression database | https://gtexportal.org/home/ | 28241135 | 2020 |
| Lnc2Cancer v3.0 | A resource for experimentally supported lncRNA/circRNA cancer associations | http://bio-bigdata.hrbmu.edu.cn/lnc2cancer/ | 33219685 | 2020 |
| RnaLocate | A resource for RNA subcellular localization curated from literature, databases and RNA-seq datasets | http://www.rna-society.org/rnalocate/ | 34551440 | 2021 |
| NONCODEV6 | Integrated knowledge database dedicated to non-coding RNA annotation | http://www.noncode.org/ | 33196801 | 2021 |
| RNACentral | A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms | https://rnacentral.org/ | 33106848 | 2021 |
| lncExpDB | A comprehensive database of experimentally supported associations between lncRNA or circRNA and human cancer | https://ngdc.cncb.ac.cn/lncexpdb/ | 33045751 | 2021 |
| GENCODE | A database that provides comprehensive gene annotation for the human and mouse genome | https://www.gencodegenes.org/ | 30357393 | 2022 |
| TANRIC | The Atlas of Non-coding RNAs in Cancer (TCGA+CCLE) | https://www.tanric.org/ | 26208906 | 2022 |
| LNCbook 2.0 | Integrated database of human long non-coding RNAs with multi-omics annotations | https://ngdc.cncb.ac.cn/lncbook/ | 36330950 | 2023 |
| GEO | Gene Expression Omnibus (GEO) is a public repository for storing and sharing gene expression data | http://www.ncbi.nlm.nih.gov/geo/ | 23193258 | 2013 |
lncInfo: This website is maintained and developed at Raghava's Lab