Important Functional Resources Related to Genomic Instability

This page provides link to important resources available on Internet. These resources/databases maintain information related to human chromosome.

Site/Database Brief Description
TICdb A database of Translocation breakpoints In Cancer, contains 1,374 fusion sequences found in human tumors.
HYBRIDdbAn integrated database for genome-wide hybrid genes in humans.
dbCRIDA database of chromosomal rearrangements in human diseases, contain 2643 records of disease-associated CR events.
ChimerDB 3.0 An enhanced database for fusion genes from cancer transcriptome and literature data mining.
DECIPHERA database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.
DACROA database of all published chromosomal rearrangements that are associated with an abnormal phenotype.
MitelmanA database of Chromosome Aberrations and Gene Fusions in Cancer related to tumor characteristics.
ChiTaRS 2.1The improved database of chimeric transcript and RNA-Seq data.
Quiver Fusion DatabaseA database of 9,368 gene fusion partners and 10,869 unique breakpoints derived from literature.
COSMICA catalogue of somatic mutation in cancer,world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer.
cBioPortalProvides visualization, analysis and download of large-scale cancer genomics data sets.
UCSC XenaAnalyze and visualize genomics data sets.
GDSCIdentifying molecular features of cancers that predict response to anti-cancer drugs.
canSARMultidisciplinary information; drug discovery.
miRBaseA databse of miRNA.
DisGeNETA larget repository of genes and variants associated to human diseases.
CTLPScannerA web server for chromothripsis-like pattern detection.
QmRLFS-finderA web server and stand-alone tool for prediction and analysis of R-loop forming sequences.
Spectral Repeat FinderA webserver for identification of repititve sequences using fourier transformation.