Download Datasets of HumCFS: A Database of Human Chromosomal Fragile Sites
User can download the bed format, text format and gff3 files of fragile site genes and miRNA's.
HumCFS bed format files
| Description | Fragile site bed files | Chromosome wise gene centric bed file | Fragile site wise gene centric bed files |
|---|---|---|---|
| Here we have provided bed format files for different categories. Description of the columns present in the bed file is given below:
column-1: provide information of chromosome column-2 & 3: provide information of genomic location column-4: provide information of gene name (HGNC symbol) column-5: consists of score to be used in track line attribute column-6: provide information of genomic strand from which the gene is transcribed. |
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HumCFS text format files
| Description | Chromosome centric text files | Fragile site gene centric text files | Human mature miRNA text file |
|---|---|---|---|
| Here we have provided text files for the different categories.
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HumCFS gff3 format files
| Description | Fragile site gff3 files |
|---|---|
| Here we have provided gff3 format files for fragile sites with additional information in comparision to bed files. Description of the columns present in the gff3 file is given below:
column-1: provide information of name of chromosome column-2 : provide information on data source type column-3: provide information on type of feature, in this case fragile site column-4 % 5: provides start and end position of the feature column-6,7 & 8: left empty but may provide information about score and phase. column-9:a semicolon-separated list of tag-value pairs, providing additional information about each features which includes fragile site name,inducer, cytoband and frequency. |
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