CoReGMC: Computational Resources for Genetically Modified Crops
Genetically Modified Crops

Therapeutic Peptide and Protein Prediction Tools

This page provides a curated list of tools dedicated to the prediction of therapeutic peptides and proteins, aiding researchers in identifying multi-functional peptides, neuropeptides, and their potential applications.

Name Year Description PubMed ID
CELA-MFP 2024 A contrast-enhanced and label-adaptive framework for predicting multi-functional therapeutic peptides. 39038935
iMFP-LG 2024 Identifies novel multi-functional peptides using protein language models and graph-based deep learning. 39585308
PEPred-Suite 2019 A robust tool for predicting therapeutic peptides using adaptive feature representation learning. 30994882
NeuroPIpred 2019 A tool to predict, design, and scan insect neuropeptides. 30914676
NeuroPpred-SVM 2023 Predicts neuropeptides using embeddings generated by the BERT model. 36749151
NeuroPpred-SHE 2024 An interpretable neuropeptides prediction model using hand-crafted features and embeddings from the T5 model. 39182368
NeuroPpred-Fuse 2021 An interpretable stacking model for predicting neuropeptides by fusing sequence information and feature selection. 34396388
NeuroPred-PLM 2023 Predicts neuropeptides using protein language models with interpretable features. 36892166
NeuroPred-FRL 2021 An interpretable model for identifying neuropeptides using feature representation learning. 33975333
NeuroPred-CLQ 2022 Predicts neuropeptides using deep temporal convolutional networks and multi-head attention mechanisms. 35988921
NeuroPred-ResSE 2024 Uses residual blocks and squeeze-excitation attention mechanisms to predict neuropeptides. 39154878
DeepNeuropePred 2024 A robust tool to predict cleavage sites in neuropeptide precursors using protein language models. 38179071
PreTP-2L 2023 Identifies therapeutic peptides and their types using a two-layer ensemble learning framework. 37010503
TPpred-LE 2023 Predicts therapeutic peptide functions using label embedding techniques. 37904157
PTPD 2019 Predicts therapeutic peptides using deep learning and word2vec representations. 31492094
TPpred-ATMV 2022 Predicts therapeutic peptides using an adaptive multi-view tensor learning model. 35561206
PrMFTP 2022 Multi-functional therapeutic peptide prediction using multi-head self-attention and class weight optimization. 36094961
ETFC 2023 Predicts multi-functional therapeutic peptides with multi-label focal dice loss functions. 37216900
CSM-peptides 2022 A computational method for rapid identification of therapeutic peptides. 36173168
PreTP-Stack 2023 Predicts therapeutic peptides using stacked ensemble learning. 35700248
PreTP-EL 2021 An ensemble learning-based model for predicting therapeutic peptides. 34459488
ITP-Pred 2021 An interpretable method for predicting therapeutic peptides using fused low-dimensional features. 33313672
TPpred-LE 2023 Therapeutic peptide function prediction based on label embedding. 37904157
PPTPP 2020 A novel prediction method for therapeutic peptides using physicochemical encoding and adaptive representation. 32348463
TPpred-SC 2024 Predicts multi-functional therapeutic peptides using multi-label supervised contrastive learning. Link