- Jain, S., Dhall, A., Patiyal, S., & Raghava, G. P. S. (2023). In silico tool for identification, designing, and searching of IL13-inducing peptides in antigens. Computational Vaccine Design, 329–338
- Dhall, A., Patiyal, S., Sharma, N., Usmani, S. S., & Raghava, G. P. S. (2023). A web-based method for the identification of IL6-based immunotoxicity in vaccine candidates. Computational Vaccine Design, 317–327
- Dhall, A., Jain, S., Sharma, N., Naorem, L. D., Kaur, D., Patiyal, S., & Raghava, G. P. S. (2022). In silico tools and databases for designing cancer immunotherapy. Advances in Protein Chemistry and Structural Biology, 129, 1–50
- Kumar, V., & Raghava, G. P. S. (2022). In Silico Design of Chemically Modified Cell-Penetrating Peptides. Methods in Molecular Biology (Clifton, N.J.), 2383, 63–71. https://doi.org/10.1007/978-1-0716-1752-6_4
- Usmani, S. S., Kumar, R., Bhalla, S., Kumar, V., & Raghava, G. P. S. (2018). In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs. Advances in Protein Chemistry and Structural Biology, 112, 221–263. https://doi.org/10.1016/bs.apcsb.2018.01.006
- Nagpal, G., Chaudhary, K., Dhanda, S. K., and Raghava, G. P. S. (2017). Computational Prediction of the Immunomodulatory Potential of RNA Sequences. Methods Mol. Biol. 1632, 75–90. doi: 10.1007/978-1-4939-7138-1_5
- Gautam A, Chaudhary K, Kumar R, Gupta S, Singh H, Raghava GP. (2016). Managing Drug Resistance in Cancer: Role of Cancer Informatics. Methods Mol Biol. 2016;1395:299-312.
- Ansari, H. R., and Raghava, G. P. S.(2013) In Silico Models for B-Cell Epitope Recognition and Signaling, In In Silico Models for Drug Discovery, pp 129-138, Humana Press
- Issac, B. and Raghava, G. P. S. (2005) FASTA servers for sequence similarity search. Proteomics Handbook. Edited by John M. Walker and published by Humana press. Chapter 48: 503-526
- Gautam A, Chaudhary K, kumar R, Gupta S, Singh H, and Raghava GPS (2015) Managing Drug Resistance In Cancer: Role of Cancer Informatics. Cancer Drug Resistance, Methods Mol Biol, 1395.
- Singh H, Gupta S, Gautam A, Raghava GP. (2015) Designing B-Cell Epitopes for Immunotherapy and Subunit Vaccines. Methods Mol Biol. 1348:327-40.
- Gautam A, Chaudhary K, Kumar R, Raghava GP. (2015) Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides. Methods Mol Biol. 1324:59-69.
- Gupta S, Kapoor P, Chaudhary K, Gautam A, Kumar R, Raghava GP. (2015)Peptide toxicity prediction. Methods Mol Biol. 1268:143-57.
- Ansari, H. R., and Raghava, G. P. (2013) In Silico Models for B-Cell Epitope Recognition and Signaling. In Silico Models for Drug Discovery, pp 129-138, Humana Press.
- Ansari, H.R., Flower, D.R., and Raghava G.P.S. (2013) On the Development of Vaccine Antigen Databases: Progress, Opportunity, and Challenge. Immunomics Reviews: Volume 5, 2013, pp 117-130.
- Lata, S. and Raghava, G.P.S. (2010) Databases and web-based tools for innate Immunity. Bioinformatics for Immunomics 3:67-76.
- Saha, S. and Raghava, G. P. S (2007) Searching and mapping of B-cell epitopes in Bcipep database. Methods Mol Biol. 409:113-24.
- Saha, S. and Raghava, G. P. S (2007) Prediction methods for B-cell epitopes. Methods Mol Biol. 409:387-94.
- Saha, S. and Raghava, G. P. S (2007) Prediction of Virulence factors of immunological interest. Methods Mol Biol. 409:407-15.
- Singh, M. K., Shrivastva, S., Raghava, G. P. S. and Varshney, G. C. (2007) Searching haptens, carrier proteins, and anti-hapten antibodies. Methods Mol Biol. 409:125-39.
- Bhasin, M., Lata, S. and Raghava, G. P. S. (2007) Searching and mapping of T-cell epitopes, MHC binders, and TAP binders. Methods Mol Biol. 409:95-112.
- Bhasin, M., Lata, S. and Raghava, G. P. S. (2007) TAPPred prediction of TAP-binding peptides in antigens . Methods Mol Biol. 409:381-6.
- Lata, S., Bhasin, M. and Raghava, G. P. S. (2007) Application of machine learning techniques in predicting MHC binders. Methods Mol Biol. 409:201-15.
- Bhasin, M. and Raghava, G. P. S. (2006) Computational methods in genome research. Applied Mycology and Biotechnology, International Annual Review series, published by the Elsevier Science, Netherlands.
- Issac, B. and Raghava, G. P. S. (2004) FASTA servers for sequence similarity search. Proteomics Handbook . Edited by John M. Walker and published by Humana Press, USA.
- Raghava, G. P. S., Solanki, R.J., Soni, V. and Agrawal, P. (2003) Fingerprinting methods for phylogenetic classification and indentification of microorganisms based on variation in 16S rRNA gene sequences. Page 373-82, Chapter 44, BioComputing: Computer Tools for Biologists. Edited By Staurt M. Brown