| Field Name | Full Description |
|---|
| Entry no | Unique AntigenDB ID for each entry |
| Name | Name of the antigen including its synonyms |
| Description | General description of antigen |
| Sequence | Primary structure (e.g. amino acid sequence, formula) |
| Type | Antigen type (Protein, Carbohydrate,Lipids etc.) |
| Structure | strcture codes (e.g. PDBID) and model struture generated by Swiss-Model if availble |
| Sequence Profile | File having sequence profile |
| Structure Profile | File having structure profile |
| Surface Access | Showing highly exposed regions as per DSSP (a PDF file generated by ASAView server) |
| Protein Class | Percentage content of secondary strctures in protein (obtained from PDBFINDER database) |
| Database References | Link of all possible databases from where data was obtained |
| Source Organism | Organism name(linked to NCBI taxonomy database) |
| Phylogenetic Tree | File having phylogenetic tree generated by Phylip |
| Literature Reference | reference and link to Pubmed |
| Comments | any specific comments |
| Field Name | Full Description |
|---|
| Entry no | Unique AntigenDB ID for each entry |
| CTL Response | Cytotoxic T-cell lymphocyte Response, Yes/no/unknown/IC50 value(if CTL response is known experimentally) |
| CTL Epitope | File containg CTL Epitope sequence, source, mapping and links to external databases |
| MHCI binders | File containing mapping of known MHC I binders |
| TAP Binders | mapping of TAP (Transporter associated with Antigen Processing) binders |
| Cleavage Site | mapping of cleavage sites |
| CTL PTM | Mapping of Post-translational modification on CTL epitope or MHC I binders (e.g. Glycosylated MHC binders) |
| Th Response | T-helper Response, Yes/no/unknown/IC50 value(if CTL response is known experimentally) |
| Th Epitope | File containg Th Epitope sequence, source, mapping and links to external databases |
| MHC II Binders | File containing mapping of known MHC II binders |
| Th PTM | Mapping of Post-translational modification on Th epitope or MHC II binders |
| Literature Reference | reference and link to Pubmed |
| Comments | any specific comments |
| Field Name | Full Description |
|---|
| Entry no | Unique AntigenDB ID for each entry |
| Swiss Annotation | Function as per SwissProt/PIR |
| GO Annotation | Function as per GO database |
| Cellular Location | Subcellular location obtained from SwissProt/DBSubloc/PSORTdb |
| Immunological Patterns | Finger print using imPRINT |
| Functional Site | pdf file containing functional domain as searched against InterPro Database |
| Sequence Variation | Shows the variation in the sequence caused due to experimental mutations, conflicts in the literature or due to geographically distributed strains. This is just a graphical representation of sequence variation of data obtained from corresponding Uniprot file. |
| Pathogen Similarity | file having BLAST search against pathogens proteomes |
| Host Similarity | file having BLAST search against Human proteins |
| Database References | Link of all possible databases from where data was obtained |
| Literature Reference | reference and link to Pubmed |
| Comments | any specific comments |
| Field Name | Full Description |
|---|
| Entry no | Unique AntigenDB ID for each entry |
| Gene | File having nucleotide Genbank entry |
| Gene Codon | Gene codon frequency (pdf file of gene's Codon Relative Adaptiveness Plot calculated from GCUA server |
| Organism Codon | Organism's Codon frequency (postscript file obtained from CBS Genome atlas database |
| Gene Expression | High/medium/low expression based on codon usage |
| GEO Expression Profile | expression profile search in GEO |
| Ebi Expression Profile | expression profile search in ArrayExpress |
| Database References | Link of all possible databases from where data was obtained |
| Literature Reference | reference and link to Pubmed |
| Comments | any specific comments |
| Field Name | Full Description |
|---|
| Entry no | Unique AntigenDB ID for each entry |
| N-Glycosylation | mapping of N-Glycosylated residues of antigens(Asp/Asn/trp etc.) |
| O-Glycosylation | mapping of O-Glycosylated residues(Lys/Pro/Ser/Thr/Tyr etc.) |
| C-Glycosylation | mapping of C-Glycosylated residues (Trp) |
| S-Glycosylation | mapping of S-Glycosylated residues (Cys) |
| Flavin | mapping of Flavin residues |
| Amidation site | mapping of amide site |
| Tyrosine Kinase | mapping of Tyrosine Kinase phosphorylation site |
| N-Myristoylation | mapping of N-Myristoylation site |
| Lipoprotein Lipid Attachment Site | mapping of prokaryptic membrane Lipoprotein Lipid Attachment Site |
| Tyrosine Sulfation | mapping of Tyrosine Sulfation site |
| other type of modifications | mapping of PTM |
|
| Database References | Link of all possible databases (dbPTM, RESIDa, PhosphoELM etc.) from where data was obtained |
| Literature Reference | reference and link to Pubmed |
| Comments | any specific comments |
