OSDDlinux Package Repository
In this repository, various softwares are available independently as deb packages. User can download any package they wish to install.
The various packages in OSDDlinux will be updated timely. We will also add some new softwares and additional packages every 4 months. The LiveCD will be updated every 6 months.
Installation steps for individual packages using .deb files
Installation steps for individual packages using apt-get command
"deb http://osddlinux.osdd.net/repo i386/" for 32 bit systems
If the line is already present in the file then ignore the step 2
| S. No. | Software Tool | Software Function | Debian File Download Link |
| 1 | abcpred | predict B cell epitope(s) in an antigen sequence | abcpred |
| 2 | algpred | prediction of allergens based on similarity of known epitope with any region of protein | algpred |
| 3 | alphapred | predicts the alpha turn residues in the given protein sequence | alphapred |
| 5 | antibp | predicts the antibacterial peptides in a protein sequence | antibp |
| 6 | antibp2 | predicts the antibacterial peptides in a protein sequence | antibp2 |
| 7 | ar_nhpred | predicts the aromatic backbone NH interaction in a given amino acid sequence | ar_nhpred |
| 8 | atpint | prediction of ATP binding residue in protein sequence | atpint |
| 9 | bcepred | predicting linear B-cell epitopes in a protein sequence | bcepred |
| 10 | betaturns | predict different types of turns such as Types I, II, IV, VIII and non-specific in a given amino acid sequence | betaturns |
| 11 | bhairpred | prediction of beta-hairpins in proteins | bhairpred |
| 12 | btxpred | predict bacterial toxins and its function from primary amino acid sequence | btxpred |
| 13 | cancer_pred | prediction of Cancer lectins | cancer_pred |
| 14 | cbtope | prediction of conformational B cell epitope using antigen primary sequence in the absence of any homology with the known structures | cbtope |
| 15 | cellppd | predict and design efficient cell penetrating peptides (CPPs) | cellppd |
| 16 | chemopred | prediction of chemokines and their receptors | chemopred |
| 17 | chpredict | predict two types of interactions: C-H...O and C-H...π interactions | chpredict |
| 18 | ctlpred | prediction of Cytotoxic T Lymphocyte epitopes | ctlpred |
| 19 | desirm | design effective siRNAs against an mRNA and find the target mRNA of a submitted siRNA | desirm |
| 20 | eslpred | prediction of subcellular localization of eukaryotic protein | eslpred |
| 21 | eslpred2 | prediction of subcellular localization of eukaryotic protein | eslpred2 |
| 22 | fadpred | prediction of FAD interacting residues in proteins | fadpred |
| 23 | gammapred | predicts the gamma turn residues in the given protein sequence | gammapred |
| 24 | glycoep | prediction of glycosites in eukaryotic glycoproteins | glycoep |
| 25 | glycopp | predicting potential N-and O-glycosites in prokaryotic protein sequence(s) | glycopp |
| 26 | gpcrpred | prediction of families and superfamilies of G-protein coupled receptors | gpcrpred |
| 27 | gpcrsclass | prediction of amine types of G-protein coupled receptors | gpcrsclass |
| 28 | gstpred | prediction of Glutathione S-transferase proteins | gstpred |
| 29 | gtpbinder | prediction of GTP binding residue in protein sequence | gtpbinder |
| 30 | hivcopred | predicting the coreceptor usage by HIV-1 | hivcopred |
| 31 | hladr4pred | HLA-DRB1*0401(MHC class II alleles) binding peptides prediction method | hladr4pred |
| 32 | hslpred | prediction of subcellular localization of human proteins | hslpred |
| 33 | icaars | prediction of Aminoacyl tRNA Synthetases and assigning class I or II to them | icaars |
| 34 | igpred | predicting different types of B-cell epitopes that can induce different class of Antibodies like IgG, IgE and IgA | igpred |
| 35 | kidoq | prediction of inhibition constant by docking and QSAR | kidoq |
| 36 | lbtope | predicting linear B-cell epitopes | lbtope |
| 37 | nadbinder | Prediction of NAD binding residues in proteins | nadbinder |
| 38 | nhlapred | predicting promiscuous MHC class I restricted T cell epitopes | nhlapred |
| 39 | nrpred | classification of nuclear receptors | nrpred |
| 40 | ntxpred | predict Neurotoxins and its source and probable function from primary amino acid sequence | ntxpred |
| 41 | pcleavage | Proteasome cleavage prediction | pcleavage |
| 42 | pepstr | prediction of the tertiary structure of small peptides | pepstr |
| 43 | pfmpred | prediction of mitochondrial proteins of malaria parasite Plasmodium falciparum | pfmpred |
| 44 | pprint | prediction of RNA-binding residues of a protein | pprint |
| 45 | premier | prediction of Mannose Interacting residues in a protein | premier |
| 46 | propred | predict MHC Class-II binding regions in an antigen sequence | propred |
| 47 | propred1 | predict MHC Class-II binding regions in an antigen sequence | propred1 |
| 48 | pseapred | prediction of proteins secreted by Malarial Parasite P.falciparum into infected-erythrocyte | pseapred |
| 49 | pslpred | prediction of subcellular localization of prokaryotic proteins | pslpred |
| 50 | rslpred | prediction of subcellular localization of rice proteins | rslpred |
| 51 | sarpred | prediction of the real value of surface acessibility (SA) using multiple sequence alignment | sarpred |
| 52 | srtpred | classification of protein sequence as secretory or non-secretory protein | srtpred |
| 53 | tappred | prediction of binding affinity of peptides toward the TAP transporter | tappred |
| 54 | tbbpred | prediction of the transmembrane Beta barrel regions in a given protein sequence | tbbpred |
| 55 | toxinpred | prediction and design of toxic/non-toxic peptides | toxinpred |
| 56 | tumorhpd | designing of Tumor Homing Peptides | tumorhpd |
| 57 | vicmpred | Prediction of Virulence factors, Information molecule, Cellular process and Metabolism molecule in the Bacterial proteins | vicmpred |
| 58 | vitapred | prediction of vitamin-interacting residues in vitamin binding protein sequences | vitapred |