Designing Peptide |
| This module help user to predict and design peptides with option to increase/decrease toxicity of the peptide.Further mutants are generated of the original peptide and also physiochemical properties displayed according to the user choice. |
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Batch Submission |
| This tool helps user to submit multiple peptides as a single query in single fasta format.This module will help user to choose best peptide from batch of peptides.Mutants of each peptide and their physiochemical properties are displayed accordingly. |
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Protein Scanning |
| This module help user to scan toxic region from the protein sequence.User can select the peptide fragment length and then all possible overlapping peptides are generated and further their mutants along with svm score are displayed.Here results are displayed in two forms a)Tabular form b)Graphical form. |
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Motif Scan |
| User can search for the motifs which are present in toxic peptides. This module will help user to find out toxic region in the peptides.The list of prominent motifs along with E value is given in Motif list module. |
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QMS calculator |
| This tool allows user to design the peptides with help of Quantitative Matrix based position specific score.User can calculate quantitative matrix score of each residue. Further max and min residue for that particular position along with the quantitative matrix score is given.User is provided with the option to mutate the residue to increase or decrease the toxicity value. |
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Matrices |
| This tool represents quantitative matrix generated on the basis of relative frequency of each amino acid at every position (1-35).Quantitative matrix is displayed for each data set, with monopeptide , dipeptide amino acid composition and physiochemical properties. |
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