SAPdb: Entry Card with Detailed Information of Peptide

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Details of SAPdb ID 1541
Primary information
SAPdb_ID1541
PMID21107375
Year2010
NameDipeptide 3
SequenceYL
N-Terminal ModificationFmoc [or N-(fluorenyl-9-methoxycarbonyl)]
C-Terminal ModificationFree
Non-terminal ModicationNone
Length2
Peptide/Conjugate/MixturePeptide
Conjugate PartnerNone
TechniqueAFM (Atomic Force Microscopy) and DLS (Dynamic Light Scattering)
SolventSodium phosphate buffer (pH 8)
MethodPeptide was dissolved in a 1 ml volume of 100 mM sodium phosphate buffer (pH 8) in the presence of varying concentrations of subtilisin (1.25–60.0 ml). The mixture was vortexed (30 s) and sonicated on ice for 20 min , and the low temperature ensures that no enzymatic conversion occurs up to this point. This was followed by heating,ceither in an oil bath or within the spectrophotometer using a temperature-controlled cuvet, at 55° for 60 min to allow enzymatic conversion to occur. The self-assembling system was then allowed to cool to room temperature. The gel samples were then left to stand for periods of 72 h.
Concentration10 mmol/kg
pH8
Temperature
Intial 55 °C heating for 1 hour and followed by cooling at room temperature
Incubation Period72 hour
Self-Assembly FormationYes
Type of Self-AssemblyTransparent gel
Size of Self-Assembled structureNA
Linear/CyclicLinear
Stability of NanostructureStable
CommentNA
Secondary information
Physico-Chemical properties
Physico-Chemical properties
STRUCTURE
Predicted Structure
SMILESN.A.