SAPdb: Entry Card with Detailed Information of Peptide

Welcome to Entry Card of Peptide


Details of SAPdb ID 1255
Primary information
SAPdb_ID1255
PMID22468743
Year2012
NameDiPhenylalanine
SequenceFF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-terminal ModicationNone
Length2
Peptide/Conjugate/MixturePeptide
Conjugate PartnerNone
TechniqueInsilico tools i.e, Coarse - grained molecular dynamics (MD) simulations and GROMACS software
SolventWater
Method40 MD simulations performed on a system consisting of 600 FF peptides at peptide concentrations: 120mg/mL
Concentration120 mg/ml
pHNA
Temperature
37 °C
Incubation Period60 - 1200 nanoseconds
Self-Assembly FormationYes
Type of Self-Assemblyvesicle (in 3/10 MD runs); Nanotube ( in 3/10 MD runs); Flat bialyer with holes shape (in 4/10 MD runs)
Size of Self-Assembled structureDiameter of vesicle : 9.2 nm
Linear/CyclicLinear
Stability of NanostructureNA
CommentNA
Secondary information
Physico-Chemical properties
Physico-Chemical properties
STRUCTURE
Predicted Structure
SMILESN[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O