SAPdb: Entry Card with Detailed Information of Peptide

Welcome to Entry Card of Peptide


Details of SAPdb ID 1254
Primary information
SAPdb_ID1254
PMID22468743
Year2012
NameDiPhenylalanine
SequenceFF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-terminal ModicationNone
Length2
Peptide/Conjugate/MixturePeptide
Conjugate PartnerNone
TechniqueInsilico tools i.e, Coarse - grained molecular dynamics (MD) simulations and GROMACS software
SolventWater
Method40 MD simulations performed on a system consisting of 600 FF peptides at peptide concentrations: 85mg/mL
Concentration85 mg/ml
pHNA
Temperature
37 °C
Incubation Period60 - 1200 nanoseconds
Self-Assembly FormationYes
Type of Self-AssemblySpherical vesicle ( in 7/10 MD runs); Nanotube (in 2/10 MD runs); Bialyer shape (in 1/10 MD runs)
Size of Self-Assembled structureDiameter of vesicle : 9.2 nm; Diameter of nanotube : ∼5.1 to ∼5.6 nm
Linear/CyclicLinear
Stability of NanostructureStable
CommentNA
Secondary information
Physico-Chemical properties
Physico-Chemical properties
STRUCTURE
Predicted Structure
SMILESN[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C=O