Details of SAPdb entry with Sequence WF |
Primary information | |
---|---|
SAPdb ID | 1011, |
PMID | 18052148 |
Peptide Name | Compound 5 |
Peptide sequence | WF |
N-Terminal Modification | Chlorination |
C-Terminal Modification | N-hexadecylamine |
Non-Terminal Modification | None |
Length | 2 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Field Emission Scanning Electron Microscopy (FE - SEM) |
Solvent | Aqueous dispersion |
Method | The aqueous dispersions of the required amount of compound was slowly heated to dissolve the compounds in water and then allowed to cool slowly (undisturbed) to room temperature in a vial. |
Conc | Minimum gelation concentration=0.4% (w/v) |
Temperature | 7 |
Temperature | Room temperature |
Incubation Time | 20-30 minutes |
Year | 2007 |
Self assembly | Yes |
Type of Self assembly | transparent hydrogel |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
Stable-to-inversion of the container | |
Hydrogel | |
NA | |
WF | |
N.A. | |
Primary information | |
SAPdb ID | 1628, |
PMID | 23795243 |
Peptide Name | WF |
Peptide sequence | WF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 2 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Insilico method: MARTINI coarse - grained molecular dynamic |
Solvent | Water |
Method | A simulation for each dipeptide (in their zwitterionic form) was set up using the GROMACS molecular dynamics package. A cubic box with 300 dipeptides, placed randomly with a minimum distance of 3 √Ö between them, was solvated in standard MARTINI CG water (four water molecules per bead) to a final concentration of ‚à º0.4 M. A Berendsen thermostat and barostat36 were used to keep the temperature at 303 K and pressure at 1 bar, respectively. Bond lengths in aromatic side chains and the backbone side-chain bonds in I, V, and Y were constrained using the LINCS algorithm.37 All boxes were energy minimized using the steepest descent integrator and then equilibrated for 4 106 time steps of 25 fs. The total screening simulation time equates to 100 ns, but because of the smoothness of the CG potentials, this roughly equates to an effective 400 ns of atomistic simulation time |
Conc | 0.4M |
Temperature | 30 °C |
Year | 2011 |
Self assembly | Yes |
Type of Self assembly | Aggregate |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Other | |
NA | |
WF | |
N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1ccccc1)C=O | |
Primary information | |
SAPdb ID | 1853, |
PMID | 27548765 |
Peptide Name | WF |
Peptide sequence | WF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 2 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | Scanning Electron Microscopy (SEM) |
Solvent | 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) |
Conc | 100 mg/mL |
Year | 2016 |
Self assembly | No |
Type of Self assembly | NA |
Tertiary Structure (Technique) | Not Predicted), |
NA | |
NA | |
NA | |
NA | |
NA | |
WF | |
N[C@@]([H])(CC(=CN2)C1=C2C=CC=C1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |
Primary information | |
SAPdb ID | 1891, |
PMID | 27841381 |
Peptide Name | WF |
Peptide sequence | WF |
N-Terminal Modification | Free |
C-Terminal Modification | Free |
Non-Terminal Modification | None |
Length | 2 |
Peptide/Conjuagate | Peptide |
Conjugate partner | None |
Technique | TEM and SEM |
Year | 2016 |
Self assembly | Yes |
Type of Self assembly | Nanoparticles |
Tertiary Structure (Technique) | Not Predicted), |
Linear | |
NA | |
NA | |
Other | |
NA | |
WF | |
N[C@@]([H])(CC(=CN2)C1=C2C=CC=C1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O | |