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Details of SAPdb entry with Sequence WF
Primary information
SAPdb ID 1011,
PMID18052148
Peptide NameCompound 5
Peptide sequenceWF
N-Terminal ModificationChlorination
C-Terminal ModificationN-hexadecylamine
Non-Terminal ModificationNone
Length2
Peptide/ConjuagatePeptide
Conjugate partnerNone
TechniqueField Emission Scanning Electron Microscopy (FE - SEM)
SolventAqueous dispersion
MethodThe aqueous dispersions of the required amount of compound was slowly heated to dissolve the compounds in water and then allowed to cool slowly (undisturbed) to room temperature in a vial.
ConcMinimum gelation concentration=0.4% (w/v)
Temperature7
TemperatureRoom temperature
Incubation Time20-30 minutes
Year2007
Self assemblyYes
Type of Self assemblytransparent hydrogel
Tertiary Structure
(Technique)		Not Predicted),
Linear
NA
Stable-to-inversion of the container
Hydrogel
NA
WF
N.A.
Primary information
SAPdb ID 1628,
PMID23795243
Peptide NameWF
Peptide sequenceWF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-Terminal ModificationNone
Length2
Peptide/ConjuagatePeptide
Conjugate partnerNone
TechniqueInsilico method: MARTINI coarse - grained molecular dynamic
SolventWater
MethodA simulation for each dipeptide (in their zwitterionic form) was set up using the GROMACS molecular dynamics package. A cubic box with 300 dipeptides, placed randomly with a minimum distance of 3 Å between them, was solvated in standard MARTINI CG water (four water molecules per bead) to a final concentration of ∼0.4 M. A Berendsen thermostat and barostat36 were used to keep the temperature at 303 K and pressure at 1 bar, respectively. Bond lengths in aromatic side chains and the backbone side-chain bonds in I, V, and Y were constrained using the LINCS algorithm.37 All boxes were energy minimized using the steepest descent integrator and then equilibrated for 4 106 time steps of 25 fs. The total screening simulation time equates to 100 ns, but because of the smoothness of the CG potentials, this roughly equates to an effective 400 ns of atomistic simulation time
Conc0.4M
Temperature30 °C
Year2011
Self assemblyYes
Type of Self assemblyAggregate
Tertiary Structure
(Technique)		Not Predicted),
Linear
NA
NA
Other
NA
WF
N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1ccccc1)C=O
Primary information
SAPdb ID 1853,
PMID27548765
Peptide NameWF
Peptide sequenceWF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-Terminal ModificationNone
Length2
Peptide/ConjuagatePeptide
Conjugate partnerNone
TechniqueScanning Electron Microscopy (SEM)
Solvent1,1,1,3,3,3-hexafluoro-2-propanol (HFIP)
Conc100 mg/mL
Year2016
Self assemblyNo
Type of Self assemblyNA
Tertiary Structure
(Technique)		Not Predicted),
NA
NA
NA
NA
NA
WF
N[C@@]([H])(CC(=CN2)C1=C2C=CC=C1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O
Primary information
SAPdb ID 1891,
PMID27841381
Peptide NameWF
Peptide sequenceWF
N-Terminal ModificationFree
C-Terminal ModificationFree
Non-Terminal ModificationNone
Length2
Peptide/ConjuagatePeptide
Conjugate partnerNone
TechniqueTEM and SEM
Year2016
Self assemblyYes
Type of Self assemblyNanoparticles
Tertiary Structure
(Technique)		Not Predicted),
Linear
NA
NA
Other
NA
WF
N[C@@]([H])(CC(=CN2)C1=C2C=CC=C1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)O