Dinucleotide based Cross-Correlation


This module allow users to compute dinucleotide based cross-correlation of all RNA sequences. User may enter either one sequence in one line or sequences in FASTA format. For more information see HELP page.

Paste Nucleotide sequence(s) in FASTA format:
OR Submit sequence file: 
  • Select portion of Sequence:
    • This section allow users to select either complete or specific portion of the seqeunce, such as

      1. Whole: Performs operation on complete sequence
      2. Start: This allows to cut the user specified portion from the starting of the sequence
      3. End: This allows to cut the user specified portion from the end of the sequence
      4. Split: This allows users to split the sequence into fragments and performs calculation indepedently
      5. Rest: This allows users to drop the residues from start and end, and performs calculation on the remaining fragment
Whole   Start        End       Split       Rest:    Start   End      
Select desired lag value:
Choose Lag    This allows users to generate the dipeptides with desired order, such as order 1 means dipeptides made of consecutive residues in the provided seqeunce i.e. no gap.
   
   Select desired Physicochemical Properties: This allows to select the properties whose composition is desired by the users.
                                       
 Adenine Content      Cytosine Content      Enthalpy      Enthalpy2      Entropy      Entropy2    
 Free Energy      Free Energy2      GC Content      Guanine Content      Hydrophilicity      Hydrophilicity2  
 Keto Content    Purine Content    Rise    Roll    Shift    Slide  
 Staking Energy    Uracil Content    Tilt    Twist  


                                                                                                                         




































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