Welcome to siRNA prediction page
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These are predicted siRNA using SAPs protein of Rhizopus oryzae. Antisense sequences of siRNAs: Antisense strand targeting mRNA sequence. Position on mRNA: denotes the position of first nucleotide of mRNA target sequence. mRNA target sequence: denotes sequence of mRNA against which siRNA is generated. Target accessibility: Probability of target sequence to be unpaired for binding with siRNA. Efficacy: denotes the efficacy of siRNAs (highest efficacy more potent to degrade the mRNA). Sequences are in descending order of efficacy.
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| Antisense Sequences of siRNA | Position on mRNA | mRNA target sequence | Target accessibility | Efficacy |
| UUAGGUUGUGAGAAUUUGG | 1979 | CCAAAUUCUCACAACCUAA | 0.021075 | 1.119731 |
| UGACAUUCUAACAAUUUCG | 684 | CGAAAUUGUUAGAAUGUCA | 0.069275 | 1.118102 |
| UCGAACUAAAUGAUCGUCG | 2208 | CGACGAUCAUUUAGUUCGA | 0.064938 | 1.117055 |
| UAGUAUUGGUCGAAUAACC | 919 | GGUUAUUCGACCAAUACUA | 0.004383 | 1.111711 |
| UAAGAGGCUAUCUAAAGCU | 30 | AGCUUUAGAUAGCCUCUUA | 0.056922 | 1.104954 |
| UUGUUGUAUCUGAAGCACG | 349 | CGUGCUUCAGAUACAACAA | 0.029893 | 1.100202 |
| UUACUAUUCACAUCUAGCG | 2186 | CGCUAGAUGUGAAUAGUAA | 0.021225 | 1.099444 |
| UUGAUAGCUAAUACAAUGG | 1550 | CCAUUGUAUUAGCUAUCAA | 0.064364 | 1.092531 |
| UUGCAUUGUCUCUUCACUC | 762 | GAGUGAAGAGACAAUGCAA | 0.028679 | 1.088335 |
| UAAAUGAGUGAAUUGAGGU | 993 | ACCUCAAUUCACUCAUUUA | 0.007157 | 1.085496 |